CHEMISTRY GLOSSARY

chain    →   lanac

Chain is a linear combination of the same type of atom in a molecule. In straight chain molecules, the atoms are arranged in a line, with each atom in the chain linked to one preceding atom and one succeeding atom of the same type. A closed chain molecule is a chain where the atoms are linked in a ring structure.

benzene    →   benzen

Benzene is a colourless liquid hydrocarbon, C₆H₆, b.p. 80 °C. It is now made from petroleum by catalytic reforming (formerly obtained from coal tar). Benzene is the archetypal aromatic compound. It has an unsaturated molecule, yet will not readily undergo addition reactions. On the other hand, it does undergo substitution reactions in which hydrogen atoms are replaced by other atoms or groups.

In 1865, Friedrich August Kekulé purposed the benzene molecule structure as a hexagonal ring which consists of six carbon atoms with alternate carbon-carbon single and carbon-carbon double bond. But such a structure should be highly reactive, and so didn't account for the unreactive nature of benzene. We now know that the best representation for the structure of benzene is indeed, hexagonal, with each C-C bond distance being identical and intermediate between those for a single and double bond. The π-orbitals from each neighbouring carbon atom overlap to form a delocalised molecular orbital which extends around the ring, giving added stability and with it, decreased reactivity. That is the reason the structural formula of benzene represents as a hexagon with a circle in the center which represents the delocalized electrons.

borane    →   borani

Borane is any of the group of compounds of boron and hydrogen (B₂H₆, B₄H₁₀, B₅H₉, B₅H₁₁...), many of which can be prepared by action of acid on magnesium boride (Mg₃B₂). Boranes are a remarkable group of compounds in that their structures cannot be described using the conventional two-electron covalent bond model.

cellulose    →   celuloza

Cellulose, (C₆H₁₀O₅)_n, is a polysaccharide that consists of a long unbranched chain of glucose units linked by (1→4)-β-glycoside bonds. Nature uses cellulose primarily as a structural material to impart strength and rigidity to plants. Leaves, grasses, and cotton are primarily cellulose. The fibrous nature of extracted cellulose has led to its use in textile industry for the production of cotton, artificial silk, etc. Cellulose also serves as raw material for the manufacture of cellulose acetate, known commercially as acetate rayon, and cellulose nitrate, known as guncotton. Gunncotton is the major ingredient in smokeless powder, the explosive propellant used in artillery shells and in ammunition for firearms.

crystal    →   kristal

Crystal is a solid with a regular geometric shape, having a characteristic internal structure and enclosed by symmetrically arranged plane surfaces, intersecting at definite and characteristic angles. In crystals the particles (atoms, ions, or molecules) have a regular three-dimensional repeating arrangement in space. This is called the crystal structure. The crystal lattice is the arrangement of points in space at which the particles are positioned.

infrared spectroscopy    →   infracrvena spektroskopija

Infrared (IR) spectroscopy is a technique used for determining the structure (and sometimes concentration) of molecules by observing how infrared radiation is absorbed by a sample.

cysteine    →   cistein

Cysteine is neutral amino acids with polar side chains. Because of its high reactivity, the thiol group of cysteine has numerous biological functions. It serves as a potent nucleophile and metal ligand (particularly for iron and zinc), but is best known for its ability to form disulfide bonds, which often make an important contribution to the stability of extracellular proteins. Cysteine is a non-essential amino acid, which means that it is biosynthesized in humans.

• Abbreviations: Cys, C
• IUPAC name: 2-amino-3-sulfanylpropanoic acid
• Molecular formula: C₃H₇NO₂S
• Molecular weight: 121.16 g/mol

deoxyribonucleic acid    →   dezoksiribonukleinska kiselina

Deoxyribonucleic acid (DNA) is a nucleic acid with 2-deoxy-D-ribose as the sugar in its nucleotides. DNA contains encoded genetic information, specifically templates for the synthesis of all of an organism’s proteins and enzymes.

DNA was first identified in the 1869 by Swiss chemist Friedrich Miescher (1844-1895). In 1953, American biologist James Dewey Watson (1928-) and English physicist Francis Harry Compton Crick (1916–2004) had discovered that DNA occurs in the cell as a double helix, with two long strands of the molecule wound around each other, and further that the chemical structure of the molecule dictates that adenine (A) always aligns or pairs with thymine (T), and cytosine (C) always pairs with guanine (G). It is this base pairing that allows DNA in a cell to copy itself, and transfer its information to a new cell. The diameter of the helix is 2.0 nm and there is a residue on each chain every 0.34 nm in the z direction. The angle between each residue on the same strand is 36°, so that the structure repeats after 10 residues (3.4 nm) on each strand.

ligand field theory    →   teorija ligandnog polja

Ligand field theory is a description of the structure of crystals containing a transition metal ion surrounded by nonmetallic ions (ligands). It is based on the construction of molecular orbitals involving the d-orbitals of the central metal ion and combinations of atomic orbitals of the ligands.

metabolism    →   metabolizam

Metabolism is a sum of all chemical and physiological processes by which the body builds and maintains itself. It is a process of building the body’s molecular structures from nutrients (anabolism) and breaking them down for energy (catabolism).