CHEMISTRY GLOSSARY

ribonucleic acid    →   ribonukleinska kiselina

Ribonucleic acid is a complex organic compound in living cells that is concerned with protein synthesis. Plays an intermediary role in converting the information contained in DNA into proteins. RNA carries the genetic information from DNA to those parts of the cell where proteins are made. Some viruses store their genetic information as RNA not as DNA.

Ribonucleic acid is a similar molecule to DNA but with a slightly different structure.

The structural difference with DNA is that RNA contains a -OH group both at the 2' and 3' position of the ribose ring, whereas DNA (which stands, in fact, for deoxy-RNA) lacks such a hydroxy group at the 2' position of the ribose. The same bases can be attached to the ribose group in RNA as occur in DNA, with the exception that in RNA thymine does not occur, and is replaced by uracil, which has an H-group instead of a methyl group at the C-5 position of the pyrimidine. Unlike the double-stranded DNA molecule, RNA is a single-stranded molecule.

The three main functionally distinct varieties of RNA molecules are: (1) messenger RNA (mRNA) which is involved in the transmission of DNA information, (2) ribosomal RNa (rRNA) which makes up the physical machinery of the synthetic process, and (3) transfer RNA (tRNA) which also constitutes another functional part of the machinery of protein synthesis.

Schrodinger equation    →   Schrodingerova jednadžba

Schrödinger equation is the basic equation of wave mechanics which, for systems not dependent on time, takes the form:

where Ψ is the wavefunction, V is the potential energy expressed as a function of the spatial coordinates, E its total energy, ² is the Laplacian operator, h is Planck’s constant, and m is the mass.

salinity    →   salinitet

Salinity (S) is a measure of the quantity of dissolved salts in seawater. It is formally defined as the total amount of dissolved solids in seawater in parts per thousand (‰) by weight when all the carbonate has been converted to oxide, the bromide and iodide to chloride, and all organic matter is completely oxidized.

Chlorinity is the oldest of the salinity measures considered and is still a corner-stone in the study of dissolved material in seawater. Based on the principle of constant relative proportions it provides a measure of the total amount of dissolved material in seawater in terms of the concentration of halides. The relationship between chlorinity (Cl) and salinity as set forth in Knudsen’s tables is

In 1962, however, a better expression for the relationship between total dissolved salts and chlorinity was found to be

Practical Salinity (S_P) was introduced as a replacement for Chlorinity. Practical Salinity is is relatively easy to measure using standard conductometers, measurements are more precise and less time consuming than measurements of Chlorinity and accurate measurements can even be made in situ. Practical salinity S_P is defined on the Practical Salinity Scale of 1978 (PSS-78) in terms of the conductivity ratio K₁₅ which is the electrical conductivity of the sample at temperature t₆₈ = 15 °C and pressure equal to one standard atmosphere, divided by the conductivity of a standard potassium chloride (KCl) solution at the same temperature and pressure. The mass fraction of KCl in the standard solution is 0.0324356 (32.4356 g of KCl in 1 kg of solution).

Note that Practical Salinity is a unit-less quantity. Though sometimes convenient, it is technically incorrect to quote Practical Salinity in "psu". For most purposes one can assume that the psu and the ‰, are synonymous.

The global average salinity of ocean waters is about 35 ‰, that is, about 35 g of solid substances are dissolved in 1 kg of seawater.

seawater    →   more

Seawater is a complex mixture of 96.5 % water, 3.5 % salts, and smaller amounts of other substances, including dissolved inorganic and organic materials, particulates, and a few atmospheric gases. The world's oceans cover nearly 71 % (361 840 000 km²) of the Earth's surface (510 100 000 km²), with an average depth of 3 682.2 m.

The density of seawater is higher than that of fresh water because of its higher salinity. Seawater's freezing point is lower than that of pure water and its boiling point is higher. The average salinity of the ocean is 35 ‰, which means that for every kilograms of water, there are 35 g of salt. The relative abundance of the major salts in seawater are constant regardless of the ocean. Only six elements and compounds comprise about 99 % of sea salts: chlorine (Cl^-), sodium (Na⁺), sulfur (SO₄^2-), magnesium (Mg²⁺), calcium (Ca²⁺), and potassium (K⁺).

Snell’s law    →   Snellov zakon

When a light ray comes on a boundary between two transparent media, it will be partly reflected and partly refracted. Both rays, reflected and refracted ray, lay in the plane of incidence. The angle of reflection is equal to the angle of incidence. The angle of refraction (Θ₂) is related to the angle of incidence (Θ₁) via Snell’s law:

where n₁ and n₂ are dimensionless constants - indexes of refraction of the two media.

Soxhlet extractor    →   Soxhletov ekstraktor

Soxhlet extractor is a laboratory apparatus designed to extract substances with a low solubility in the extracting solvent. The method described by the German chemist Franz von Soxhlet (1848-1926) in 1879 is the most commonly used example of a semi-continuous method applied to extraction of lipids from foods. In the Soxhlet extractor, the sample soaks in hot solvent that is periodically siphoned off, distilled and returned to the sample. During each cycle, a portion of the non-volatile compound dissolves in the solvent. After many cycles the desired compound is concentrated in the distillation flask. The solvent in the flask is then evaporated and the mass of the remaining lipid is measured.

stoichiometric coefficient    →   stehiometrijski koeficijent

Stoichiometric coefficient (ν) is the number appearing before the symbol for each compound in the equation for a chemical reaction. By convention, it is negative for reactants and positive for products.

Stoichiometric coefficients describe the stoichiometry of the chemical reaction.

In this equation, a, b, c and d are called as Stoichiometric coefficients of the A, B, C and D respectively.

starch    →   škrob

Starch (C₆H₁₀O5)_x is a polysaccharide used by plants to stockpile glucose molecules. It is the major component of flour, potatoes, rice, beans, corn, and peas. Starch is a mixture of two different polysaccharides: amylose (about 20 %), which is insoluble in cold water, and amylopectin (about 80 %), which is soluble in cold water. Amylose is composed of unbranched chains of D-glucose units joined by α(1→4)-glycosidic linkages. Unlike amylose, which are linear polymers, amylopectin contains α(1→6)-glycoside branches approximately every 25 glucose units.

Starch digestion begins in the mouth via the action of amylase, a digestive enzyme present in saliva. The process is completed in the small intestine by the pancreatic amylase. The final products of starch digestion, glucose molecules, are absorbed into the intestinal bloodstream and transported to the liver. Like most enzymes, glycosidases are highly selective in their action. They hydrolyze only the α-glycoside links in starch and leave the β-glycoside links in cellulose untouched. Starch is important food stuff and is used in adhesives, and sizes, in laundering, pharmacy and medicine.

supercritical fluid    →   superkritični fluid

Supercritical fluid is any substance above its critical temperature and critical pressure (see phase diagram). It shows unique properties that are different from those of either gases or liquids under standard conditions. A supercritical fluid has both the gaseous property of being able to penetrate anything, and the liquid property of being able to dissolve materials into their components. Solublity increases with increasing density (i.e. with increasing pressure). An example of this is naphthalene which is practically insoluble in low pressure carbon dioxide. At 100 bar the solubility is 10 g/L and at 200 bar it is 50 g/L. Rapid expansion of supercritical solutions leads to precipitation of a finely divided solid.

Tafel plot    →   Tafelov dijagram

Tafel plot is the graph of the logarithm of the current density j against the overpotential η in electrochemistry in the high overpotential limit. An electrode when polarised frequently yields a current potential relationship over a region which can be approximated by:

where η is change in open circuit potential, i is the current density, B and i₀ is constants. B is known as the Tafel Slope. If this behaviour is observed a plot of the semilogarithmic components is known as the Tafel line and the diagram is called the Tafel diagram.