CHEMISTRY GLOSSARY

hexagonal close-packed structure    →   heksagonska gusta slagalina

In a hexagonal close-packed (hcp) arrangement of atoms, the unit cell consists of three layers of atoms. The top and bottom layers (a) contain six atoms at the corners of a hexagon and one atom at the center of each hexagon. The middle layer (b) contains three atoms nestled between the atoms of the top and bottom layers, hence, the name close-packed. The hexagonal close packed structure can be made by piling layers in the a-b-a-b-a-b... sequence.

hexagonal lattice    →   heksagonska rešetka

Hexagonal lattice has lattice points at the twelve corners of the hexagonal prism and at the centers of the two hexagonal faces of the unit cell. It has unit cell vectors a=b≠c and interaxial angles α=β=90° and γ=120°.

ionic radius    →   ionski radijus

Ionic radius is the radius of anions and cations in crystalline ionic compounds, as determined by consistently partitioning the center-to-center distance of ions in those compounds. In general, negative ions have larger ionic radii than positive ions.

isoleucine    →   izoleucin

Isoleucine is hydrophobic amino acids with aliphatic side chain. It is one of the three amino acids having branched hydrocarbon side chains. The side chains of these amino acids are not reactive but, these residues are critically important for ligand binding to proteins, and play central roles in protein stability. Isoleucine is an essential amino acid, which means that humans cannot synthesize it, so it must be ingested.

• Abbreviations: Ile, I
• IUPAC name: 2-amino-3-methylpentanoic acid
• Molecular formula: C₆H₁₃NO₂
• Molecular weight: 131.12 g/mol

Liebig condenser    →   Liebigovo hladilo

Liebig condenser is used for condensing of vapours that pass trough the centre tube. It is cooled with water that passes in the outer tube (shell around the centre tube) in the opposite direction than the one of hot vapour. Though named after the German chemist Justus von Liebig (1803-1873), he cannot be given credit for having invented it because it had already been in use for some time before him.

ligand    →   ligand

Ligand is an ion (F^-, Cl^-, Br^-, I^-, S^2-, CN^-, NCS^-, OH^-, NH₂^-) or molecule (NH₃, H₂O, NO, CO) that donates a pair of electrons to a metal atom or ion in forming a coordination complex. The main way of classifying ligands is by the number of points at which they are attached to, or bound to, the metal center. This is the denticity. Ligands with one potential donor atom are monodentate. Polydentate ligand is a ligand that is attached to a central metal ion by bonds from two or more donor atoms. Ligands with more than one potential donor atom are known as ambidentate, such as the thiocyanate ion, NCS-, which can bind to the metal center with either the nitrogen or sulphur atoms. Chelating ligands are those polydentate ligands which can form a ring including the metal atom.

linear molecular geometry    →   linearna geometrija molekule

Linear molecule is a molecule in which atoms are deployed in a straight line (under 180° angle). Molecules with an linear electron pair geometries have sp hybridization at the central atom. An example of linear electron pair and molecular geometry are carbon dioxide (O=C=O) and beryllium hydride BeH₂.

lysine    →   lizin

Lysine is an electrically charged amino acids with basic side chains. Lysine is a base, as are arginine and histidine. The amino group is highly reactive and often participates in reactions at the active centers of enzymes. Lysine plays an important role in coordinating negatively charged ligands. It is an essential amino acid, which means that humans cannot synthesize it, so it must be ingested.

• Abbreviations: Lys, K
• IUPAC name: 2,6-diaminohexanoic acid
• Molecular formula: C₆H₁₄N₂O₂
• Molecular weight: 146.19 g/mol

mass    →   masa

Mass (m) is the quantity of matter contained in a particle or body regardless of its location in the universe. Mass is constant, whereas weight is affected by the distance of a body from the centre of the Earth (or of other planet). The SI unit is kilogram.

According to the Einstein equation

all forms of energy possess a mass equivalent.

molecular shape    →   oblik molekule

Molecular shape is the three dimensional arrangement of atoms in space around a central atom. The molecular formula of a substance does not give an indication of its shape. For example, CO₂ is a linear molecule, but SO₂ is angular.

The three-dimensional shapes of many small molecules can be predicted by applying the valence shell electron pair repulsion theory (VSEPR). When atoms combine to form molecules, pairs of valence electrons arrange themselves as far from each other as possible. Another way to characterize molecular shape is in terms of hybrid orbitals.