CHEMISTRY GLOSSARY

Bravais lattice    →   Bravaisova rešetka

Bravais lattice is a set of points constructed by translating a single point in discrete steps by a set of basis vectors. The French crystallographer Auguste Bravais (1811-1863) established that in three-dimensional space only fourteen different lattices may be constructed. All crystalline materials recognised till now fit in one of these arrangements. The fourteen three-dimensional lattices, classified by crystal system, are shown to the bottom.

Crystal system	Bravais lattices
cubic a=b=c α=β=γ=90°
	simple cubic	body-centered cubic	face-centered cubic
tetragonal a=b≠c α=β=γ=90°
	simple tetragonal	body-centered tetragonal
orthorhombic a≠b≠c α=β=γ=90°
	simple orthorhombic	base-centered orthorhombic	body-centered orthorhombic	face-centered orthorhombic
monoclinic a≠b≠c α=γ=90°≠β
	simple monoclinic	base-centered monoclinic
hexagonal a=b≠c α=β=90° γ=120°
	hexagonal
rhombohedral a=b=c α=β=γ≠90°
	rhombohedral
triclinic a≠b≠c α≠β≠γ≠90°
	triclinic

fcc    →   fcc

fcc is abbreviation for face-centered cubic lattice.

anomer    →   anomer

Anomers are diastereoisomers of cyclic forms of sugars or similar molecules differing in the configuration at the anomeric carbon (C-1 atom of an aldose or the C-2 atom of a 2-ketose). The cyclic forms of carbohydrates can exist in two forms, α- and β- based on the position of the substituent at the anomeric center. Anomer are designated α if the configuration at the anomeric carbon is the same as that at the reference asymmetric carbon in a Fischer projection. If the configuration differs the anomer is designated β. For example, α-D-glucopyranose and β-D-glucopyranose, the two cyclic forms of glucose, are anomers.

arginine    →   arginin

Arginine is an electrically charged amino acids with basic side chains. It is one of the least frequent amino acids. As a group the charged amino acids are important for making proteins soluble. These residues are generally located on the surface of the protein. Arginine is well designed to bind the phosphate anion, and is often found in the active centers of proteins that bind phosphorylated substrates. As a cation, arginine, as well as lysine, plays a role in maintaining the overall charge balance of a protein. Although arginine is considered an essential amino acid (it must be obtained through the diet), this is true only during the juvenile period in humans.

• Abbreviations: Arg, R
• IUPAC name: 2-amino-5-(diaminomethylideneamino)pentanoic acid
• Molecular formula: C₆H₁₄N₄O₂
• Molecular weight: 174.20 g/mol

aspartic acid    →   asparaginska kiselina

Aspartic acid is an electrically charged amino acids with acidic side chains. As a group the charged amino acids are relatively abundant and are generally located on the surface of the protein. Aspartic acid and glutamic acid play important roles as general acids in enzyme active centers, as well as in maintaining the solubility and ionic character of proteins. Aspartic acid (sometimes referred to as asparate depending on pH) is non-essential in mammals, being produced from oxaloacetate by transamination.

• Abbreviations: Asp, D
• IUPAC name: 2-aminobutanedioic acid
• Molecular formula: C₄H₇NO₄
• Molecular weight: 133.10 g/mol

benzene    →   benzen

Benzene is a colourless liquid hydrocarbon, C₆H₆, b.p. 80 °C. It is now made from petroleum by catalytic reforming (formerly obtained from coal tar). Benzene is the archetypal aromatic compound. It has an unsaturated molecule, yet will not readily undergo addition reactions. On the other hand, it does undergo substitution reactions in which hydrogen atoms are replaced by other atoms or groups.

In 1865, Friedrich August Kekulé purposed the benzene molecule structure as a hexagonal ring which consists of six carbon atoms with alternate carbon-carbon single and carbon-carbon double bond. But such a structure should be highly reactive, and so didn't account for the unreactive nature of benzene. We now know that the best representation for the structure of benzene is indeed, hexagonal, with each C-C bond distance being identical and intermediate between those for a single and double bond. The π-orbitals from each neighbouring carbon atom overlap to form a delocalised molecular orbital which extends around the ring, giving added stability and with it, decreased reactivity. That is the reason the structural formula of benzene represents as a hexagon with a circle in the center which represents the delocalized electrons.

close-packed structure    →   gusta slagalina

Close packing is the packing of spheres so as to occupy the minimum amount of space. The name close packed refers to the packing efficiency of 74.05 %. There are two types of close packing: hexagonal and cubic. One layer, with atoms centered on sites labeled a. Two layers, with the atoms of the second layer centered on sites labeled b. The third layer can be placed on the sites labeled c (giving cubic close-packing) or over those marked a (giving hexagonal close-packing).

cubic close-packed structure    →   kubična gusta slagalina

In a cubic close-packed (ccp) arrangement of atoms, the unit cell consists of four layers of atoms. The top and bottom layers (a) contain six atoms at the corners of a hexagon and one atom at the center of each hexagon. The atoms in the second layer (b) fit into depressions in the first layer. The atoms in the third layer (c) occupy a different set of depressions than those in the first. The cubic close packed structure can be made by piling layers in the a-b-c-a-b-c-a-b-c... sequence.

diastereoisomer    →   dijastereoizomer

Diastereoisomers (diastereomers) are stereoisomers of a compound having two or more chiral centers that are not a mirror image of another stereoisomer of the same compound. For example, in the structure below, 1 and 2 are enantiomers and so are 3 and 4; 1 and 3 are diastereoisomers, as are 2 and 4. Unlike enantiomers, diastereoisomers need not have closely similar physical and chemical properties

crystal system    →   kristalni sustav

Crystal system is a method of classifying crystalline substances on the basis of their unit cell. There are seven unique crystal systems. The simplest and most symmetric, the cubic (or isometric) system, has the symmetry of a cube. The other six systems, in order of decreasing symmetry, are hexagonal, tetragonal, rhombohedral (also known as trigonal), orthorhombic, monoclinic and triclinic.

Crystal system	Unit-cell	Conditions on unit-cell edges and angles
cubic		a=b=c α=β=γ=90°
hexagonal		a≠c α=γ=90° β=120°
tetragonal		a=b≠c α=β=γ=90°
rhombohedral		a=b=c α=β=γ≠90°
orthorhombic		a≠b≠c α=β=γ=90°
monoclinic		a≠b≠c α=γ=90°≠β
triclinic		a≠b≠c α≠β≠γ≠90°