CHEMISTRY GLOSSARY

porphyrin    →   porfirin

Porphyrin is a planar ligand with a central ring structure and various substituent groups at the edges of the ring.

potential energy    →   potencijalna energija

Potential energy (E_p) is the energy stored in a body or system as a consequence of its position, shape, or state (this includes gravitation energy, electrical energy, nuclear energy, and chemical energy). Gravitational potential energy is the energy associated with the state of separation between bodies that attracts each other via gravitational force. Elastic potential energy is the energy associated with the state of compression or extension of an elastic object. Thermal energy is associated with the random motions of atoms and molecules in a body.

proline    →   prolin

Proline has an aliphatic side chain with a distinctive cyclic structure. It is unusual because it is conformationally restricted. The secondary amino (imino) group of proline residues is held in a rigid conformation that reduces the structural flexibility of polypeptide regions containing proline. It is not an essential amino acid, which means that the human body can synthesize it.

• Abbreviations: Pro, P
• IUPAC name: pyrrolidine-2-carboxylic acid
• Molecular formula: C₅H₉NO₂
• Molecular weight: 115.13 g/mol

redox reaction    →   redoks-reakcija

Redox reaction is an oxidation-reduction reaction is a reaction in which one or more electrons are transferred. When an atom, ion, or molecule loses one or more electrons, it is oxidised. When an atom, ion, or molecule gains one or more electrons, it is reduced.

resonance    →   rezonancija

Resonance is a stabilising quality of certain molecules that can be represented by considering the electron distribution in an ion or molecule as a composite of two or more forms, in those cases where a single form is an inadequate representation; for example, benzene and the carbonate ion. A various canonical structures can be drawn to show how electron delocalisation will explain the discrepancy, the difference in electron density

rhombohedral crystal system    →   romboedarski kristalni sustav

Rhombohedral crystal system is also known as the trigonal system. The crystallographic axes used in this system are of equal length. None of the axes are perpendicular to any other axis.

rhombohedral lattice    →   romboedarska rešetka

Rhombohedral (or trigonal) lattice has one lattice point at the each corner of the unit cell. It has unit cell vectors a=b=c and interaxial angles α=β=γ≠90°.

serine    →   serin

Serine is neutral amino acids with polar side chains. It is one of two hydroxyl amino acids. Both are commonly considered to by hydrophilic due to the hydrogen bonding capacity of the hydroxyl group. Serine often serves as a nucleophile in many enzyme active sites, and is best known for its role in the serine proteases. Serine is a site of phosphorylation and glycosylation which is important for enzyme regulation and cell signaling. It is not essential to the human diet, since it is synthesized in the body from other metabolites, including glycine.

• Abbreviations: Ser, S
• IUPAC name: 2-amino-3-hydroxypropanoic acid
• Molecular formula: C₃H₇NO₃
• Molecular weight: 105.09 g/mol

ribonucleic acid    →   ribonukleinska kiselina

Ribonucleic acid is a complex organic compound in living cells that is concerned with protein synthesis. Plays an intermediary role in converting the information contained in DNA into proteins. RNA carries the genetic information from DNA to those parts of the cell where proteins are made. Some viruses store their genetic information as RNA not as DNA.

Ribonucleic acid is a similar molecule to DNA but with a slightly different structure.

The structural difference with DNA is that RNA contains a -OH group both at the 2' and 3' position of the ribose ring, whereas DNA (which stands, in fact, for deoxy-RNA) lacks such a hydroxy group at the 2' position of the ribose. The same bases can be attached to the ribose group in RNA as occur in DNA, with the exception that in RNA thymine does not occur, and is replaced by uracil, which has an H-group instead of a methyl group at the C-5 position of the pyrimidine. Unlike the double-stranded DNA molecule, RNA is a single-stranded molecule.

The three main functionally distinct varieties of RNA molecules are: (1) messenger RNA (mRNA) which is involved in the transmission of DNA information, (2) ribosomal RNa (rRNA) which makes up the physical machinery of the synthetic process, and (3) transfer RNA (tRNA) which also constitutes another functional part of the machinery of protein synthesis.

sigma bond    →   sigma veza

Most single bonds are sigma bonds (σ-bond). In the valence bond theory, a sigma bond is a valence bond that is symmetrical around the imaginary line between the bonded atoms.