CHEMISTRY GLOSSARY

tetrahedral molecular geometry    →   tetraedarska geometrija molekule

Tetrahedral is a molecular shape that results when there are four bonds and no lone pairs around the central atom in the molecule. The atoms bonded to the central atom lie at the corners of a tetrahedron with 109.5° angles between them. Molecules with an tetrahedral electron pair geometries have sp³ hybridization at the central atom. The ammonium ion (NH₄⁺) and methane (CH₄) have a tetrahedral molecular geometry.

trigonal bipyramidal molecular geometry    →   trigonska bipiramidalna geometrija molekule

Trigonal bipyramidal (trigonal bipyramidal shape) is a molecular geometry that results when there are five bonds and no lone pairs on the central atom in the molecule. Three of the bonds are arranged along the atom’s equator, with 120° angles between them; the other two are placed at the atom’s axis. Axial bonds are at right angles to the equatorial bonds. Molecules with an trigonal bipyramidal electron pair geometries have sp³d (or dsp³) hybridization at the central atom. The PCl₅ molecule has a trigonal bipyramidal molecular geometry.

trigonal planar molecular geometry    →   trigonska planarna geometrija molekule

Trigonal planar is a molecular shape that results when there are three bonds and no lone pairs around the central atom in the molecule. The pairs are arranged along the central atom’s equator, with 120° angles between them. Molecules with an trigonal planar electron pair geometries have sp²d hybridization at the central atom. The carbonate ion (CO₃^2-) has a trigonal planar geometry.

trigonal pyramidal molecular geometry    →   trigonska piramidalna geometrija molekule

Trigonal pyramidal is a molecular shape that results when there are three bonds and one lone pair on the central atom in the molecule. Molecules with an tetrahedral electron pair geometries have sp³ hybridization at the central atom. Ammonia (NH₃) is a trigonal pyramidal molecule.

asparagine    →   asparagin

Asparagine is neutral amino acids with polar side chains. The polar amino acids are an important class of amino acids since they provide many of the functional groups found in proteins. Asparagine is a common site for attachment of carbohydrates in glycoproteins. In general this is not very reactive residues. Asparagine is amide derivative of aspartic acid. Asparagine is not essential for humans, which means that it can be synthesized from central metabolic pathway intermediates and is not required in the diet.

• Abbreviations: Asn, N
• IUPAC name: 2,4-diamino-4-oxobutanoic acid
• Molecular formula: C₄H₈N₂O₃
• Molecular weight: 132.12 g/mol

complex    →   kompleks

Complex or coordination compound is formed when metal ion (central ion) reacts with molecules or ions which have free electron pairs (ligand). Metal ion and ligand are bonded with a polar covalent bond in which both electrons are given by the ligand.

cysteine    →   cistein

Cysteine is neutral amino acids with polar side chains. Because of its high reactivity, the thiol group of cysteine has numerous biological functions. It serves as a potent nucleophile and metal ligand (particularly for iron and zinc), but is best known for its ability to form disulfide bonds, which often make an important contribution to the stability of extracellular proteins. Cysteine is a non-essential amino acid, which means that it is biosynthesized in humans.

• Abbreviations: Cys, C
• IUPAC name: 2-amino-3-sulfanylpropanoic acid
• Molecular formula: C₃H₇NO₂S
• Molecular weight: 121.16 g/mol

dipole moment    →   dipolni moment

Electric dipole moment (μ) is a product of the positive charge and the distance between the charges. Dipole moments are often stated in debyes; The SI unit is the coulomb metre. In a diatomic molecule, such as HCl, the dipole moment is a measure of the polar nature of the bond; i.e. the extent to which the average electron charges are displaced towards one atom (in the case of HCl, the electrons are attracted towards the more electronegative chlorine atom). In a polyatomic molecule, the dipole moment is the vector sum of the dipole moments of the individual bonds. In a symmetrical molecule, such as tetrafluoromethane (CF₄) there is no overall dipole moment, although the individual C-F bonds are polar.

electronegativity    →   elektronegativnost

Electronegativity is a parameter originally introduced by L. Pauling which describes, on a relative basis, the power of an atom to attract electrons. For example, in hydrogen chloride, the chlorine atom is more electronegative than the hydrogen and the molecule is polar, with a negative charge on the chlorine atom.

There are various ways of assigning values for the electronegativity of an element. Pauling electronegativities are based on bond dissociation energies using a scale in which fluorine, the most electronegative element, has the value 4 and francium, the lowest electronegative element, has the value 0.7.

glutamine    →   glutamin

Glutamine is neutral amino acids with polar side chains. It serves as an important carrier of ammonia and contributes it to the formation of urea and purines. Glutamine is not recognized as an essential amino acid but may become conditionally essential in certain situations, including intensive athletic training or certain gastrointestinal disorders. It is synthesized by the enzyme glutamine synthetase from glutamate and ammonia.

• Abbreviations: Gln, Q
• IUPAC name: 2,5-diamino-5-oxopentanoic acid
• Molecular formula: C₅H₁₀N₂O₃
• Molecular weight: 146.14 g/mol