CHEMISTRY GLOSSARY

glutamic acid    →   glutaminska kiselina

Glutamic acid is an electrically charged amino acids. It is one of the two amino acids that contain a carboxylic acid group in its side chains. These acids play important roles as general acids in enzyme active centers, as well as in maintaining the solubility and ionic character of proteins. Glutamic acid is commonly referred to as glutamate, because its carboxylic acid side chain will be deprotonated and thus negatively charged in its anionic form at physiological pH. Glutamic acid is referred to as a non-essential amino acid because a healthy human can synthesize all the glutamic acid needed for normal body function from other amino acids.

• Abbreviations: Glu, E
• IUPAC name: 2-aminopentanedioic acid
• Molecular formula: C₅H₉NO₄
• Molecular weight: 147.13 g/mol

intermediate    →   intermedijer

Intermediate is a molecular or ionic species that is formed (directly or indirectly) from the reactants and reacts further (directly or indirectly) to form the products of the reaction. It does not accumulate during the course of the reaction.

glutamine    →   glutamin

Glutamine is neutral amino acids with polar side chains. It serves as an important carrier of ammonia and contributes it to the formation of urea and purines. Glutamine is not recognized as an essential amino acid but may become conditionally essential in certain situations, including intensive athletic training or certain gastrointestinal disorders. It is synthesized by the enzyme glutamine synthetase from glutamate and ammonia.

• Abbreviations: Gln, Q
• IUPAC name: 2,5-diamino-5-oxopentanoic acid
• Molecular formula: C₅H₁₀N₂O₃
• Molecular weight: 146.14 g/mol

glycine    →   glicin

Glycine is the smallest amino acid and is unique because it lacks a side chain. This gives it more conformational freedom than any other amino acid. Glycine is often found in turns and loops where other amino acids would be sterically unacceptable. Although it is formally nonpolar, it’s very small side chain makes no real contribution to hydrophobic interactions. Glycine is not essential to the human diet, as it is biosynthesized in the body from the amino acid serine.

• Abbreviations: Gly, G
• IUPAC name: 2-aminoacetic acid
• Molecular formula: C₂H₅NO₂
• Molecular weight: 75.07 g/mol

histidine    →   histidin

Histidine is an electrically charged amino acids with basic side chains. It is an essential amino acid, which means that humans cannot synthesize it, so it must be ingested. Histidine is perhaps the most common and versatile catalytic residue in proteins. The imidazole sidechain of histidine has a pKa of approximately 6.0. This means that, at physiologically relevant pH values, relatively small shifts in pH will change its average charge. The unprotonated imidazole is nucleophilic and can serve as a general base, while the protonated form can serve as a general acid. In addition, it is often a ligand for transition metal ions such as iron and zinc.

• Abbreviations: His, H
• IUPAC name: 2-amino-3-(1H-imidazol-5-yl)propanoic acid
• Molecular formula: C₆H₉N₃O₂
• Molecular weight: 155.15 g/mol

ion    →   ion

Ion is an atomic or molecular particle having a net electric charge. Positively charged ions are cations, negatively charged ones anions.

isomer    →   izomer

Isomers are compounds that have identical molecular formulae but differ in the nature or sequence of bonding of their atoms (structural isomerism) or in the arrangement of their atoms in space (stereoisomerism).

Gratzel solar cell    →   Gratzelova sunčeva ćelija

Grätzel solar cell is photoelectrochemical cell, developed by Michael Grätzel and collaborators, simulates some characteristics of the natural solar cell, which enables photosynthesis take place. In natural solar cell the chlorophyll molecules absorb light (most strongly in the red and blue parts of the spectrum, leaving the green light to be reflected). The absorbed energy is sufficient to knock an electron from the excited chlorophyll. In the further transport of electron, other molecules are involved, which take the electron away from chlorophyll. In Grätzel cell, the tasks of charge-carrier generation and transport are also assigned to different species.

His device consists of an array of nanometre-sized crystallites of the semiconductor titanium dioxide, welded together and coated with light-sensitive molecules that can transfer electrons to the semiconductor particles when they absorb photons. So, light-sensitive molecules play a role equivalent to chlorophyll in photosynthesis. In Grätzel cell, the light-sensitive molecule is a ruthenium ion bound to organic bipyridine molecules, which absorb light strongly in the visible range; titanium dioxide nanocrystals carry the received photoexcited electrons away from electron donors. On the other hand, a donor molecule must get back an electron, so that it can absorb another photon. So, this assembly is immersed in a liquid electrolyte containing molecular species (dissolved iodine molecules) that can pick up an electron from an electrode immersed in the solution and ferry it to the donor molecule. These cells can convert sunlight with efficiency of 10 % in direct sunlight and they are even more efficient in diffuse daylight.

hydration    →   hidratacija

Hydration is addition of water or the elements of water (i.e. H and OH) to a molecular entity. The term is also used in a more restricted sense for the process:

isoleucine    →   izoleucin

Isoleucine is hydrophobic amino acids with aliphatic side chain. It is one of the three amino acids having branched hydrocarbon side chains. The side chains of these amino acids are not reactive but, these residues are critically important for ligand binding to proteins, and play central roles in protein stability. Isoleucine is an essential amino acid, which means that humans cannot synthesize it, so it must be ingested.

• Abbreviations: Ile, I
• IUPAC name: 2-amino-3-methylpentanoic acid
• Molecular formula: C₆H₁₃NO₂
• Molecular weight: 131.12 g/mol