CHEMISTRY GLOSSARY

anisotropy    →   anizotropija

Anisotropy is the property of molecules and materials to exhibit variations in physical properties along different molecular axes of the substance.

Avogadro, Amadeo    →   Avogadro, Amadeo

Amadeo Avogadro (1776-1856) is an Italian chemist and physicist that proposed a correct molecular explanation for Gay-Lussac’s law of combining volumes. His work provided a simple way to determine atomic weights and molecular weights of gases. He is published a theory about the movement of particles in gases that became known as Avogadro’s Law.

allotropy    →   alotropija

Allotropy (Gr. allos, other, and tropos, manner) is the phenomenon of an element existing in two or more physical forms in the same physical state. The difference between the forms involves either crystaline structure (white, red and black phosphorus), the number of atoms in the molecule of a gas (diatomic oxygen and triatomic ozone), or the molecular structure of a liquid (liquid helium an helium II).

In some cases, the allotropes are stable over a temperature range, with a definite transition point at which one changes into the other. For instance, tin has two allotropes: white (metallic) tin stable above 13.2 °C and grey (nonmetallic) tin stable below 13.2 °C. This form allotropy is called enantiotropy. Form of allotropy, in which there is no transition temperature at which the two are in equilibrium, is called monotropy.

Allotropy does not apply to the substance existing in different physical states as, for example, when ice melts and changes from solid ice to liquid water.

Allotropy is generally restricted to describing polymorphic behaviour in elements, while polymorphism may refer to any material having multiple crystal structures.

angular momentum    →   moment količine gibanja

Angular momentum is a physical quantity defined for rotating motion (in analogy to momentum that is defined for linear motion). If a body rotates around a specified axis, its angular momentum equals

Where I is the rotational inertia concerning that axis and ω is the angular velocity of the body.

Angular momentum can also be defined for a point-like body concerning a specified origin (in that case, it is not necessary that the point-like body undergoes circular motion). Rotational inertia of the point-like body, concerning that origin equals:

Where m is the mass of the body and r is its distance from the origin.

arginine    →   arginin

Arginine is an electrically charged amino acids with basic side chains. It is one of the least frequent amino acids. As a group the charged amino acids are important for making proteins soluble. These residues are generally located on the surface of the protein. Arginine is well designed to bind the phosphate anion, and is often found in the active centers of proteins that bind phosphorylated substrates. As a cation, arginine, as well as lysine, plays a role in maintaining the overall charge balance of a protein. Although arginine is considered an essential amino acid (it must be obtained through the diet), this is true only during the juvenile period in humans.

• Abbreviations: Arg, R
• IUPAC name: 2-amino-5-(diaminomethylideneamino)pentanoic acid
• Molecular formula: C₆H₁₄N₄O₂
• Molecular weight: 174.20 g/mol

cation    →   kation

Cation is a positively charged atomic or molecular particle.

chain    →   lanac

Chain is a linear combination of the same type of atom in a molecule. In straight chain molecules, the atoms are arranged in a line, with each atom in the chain linked to one preceding atom and one succeeding atom of the same type. A closed chain molecule is a chain where the atoms are linked in a ring structure.

asparagine    →   asparagin

Asparagine is neutral amino acids with polar side chains. The polar amino acids are an important class of amino acids since they provide many of the functional groups found in proteins. Asparagine is a common site for attachment of carbohydrates in glycoproteins. In general this is not very reactive residues. Asparagine is amide derivative of aspartic acid. Asparagine is not essential for humans, which means that it can be synthesized from central metabolic pathway intermediates and is not required in the diet.

• Abbreviations: Asn, N
• IUPAC name: 2,4-diamino-4-oxobutanoic acid
• Molecular formula: C₄H₈N₂O₃
• Molecular weight: 132.12 g/mol

aspartic acid    →   asparaginska kiselina

Aspartic acid is an electrically charged amino acids with acidic side chains. As a group the charged amino acids are relatively abundant and are generally located on the surface of the protein. Aspartic acid and glutamic acid play important roles as general acids in enzyme active centers, as well as in maintaining the solubility and ionic character of proteins. Aspartic acid (sometimes referred to as asparate depending on pH) is non-essential in mammals, being produced from oxaloacetate by transamination.

• Abbreviations: Asp, D
• IUPAC name: 2-aminobutanedioic acid
• Molecular formula: C₄H₇NO₄
• Molecular weight: 133.10 g/mol

benzene    →   benzen

Benzene is a colourless liquid hydrocarbon, C₆H₆, b.p. 80 °C. It is now made from petroleum by catalytic reforming (formerly obtained from coal tar). Benzene is the archetypal aromatic compound. It has an unsaturated molecule, yet will not readily undergo addition reactions. On the other hand, it does undergo substitution reactions in which hydrogen atoms are replaced by other atoms or groups.

In 1865, Friedrich August Kekulé purposed the benzene molecule structure as a hexagonal ring which consists of six carbon atoms with alternate carbon-carbon single and carbon-carbon double bond. But such a structure should be highly reactive, and so didn't account for the unreactive nature of benzene. We now know that the best representation for the structure of benzene is indeed, hexagonal, with each C-C bond distance being identical and intermediate between those for a single and double bond. The π-orbitals from each neighbouring carbon atom overlap to form a delocalised molecular orbital which extends around the ring, giving added stability and with it, decreased reactivity. That is the reason the structural formula of benzene represents as a hexagon with a circle in the center which represents the delocalized electrons.