CHEMISTRY GLOSSARY

oxonium ion    →   oksonijev ion

Oxonuim ion (H₃O⁺) is formed when a molecule of water binds with a proton.

deoxyribonucleic acid    →   dezoksiribonukleinska kiselina

Deoxyribonucleic acid (DNA) is a nucleic acid with 2-deoxy-D-ribose as the sugar in its nucleotides. DNA contains encoded genetic information, specifically templates for the synthesis of all of an organism’s proteins and enzymes.

DNA was first identified in the 1869 by Swiss chemist Friedrich Miescher (1844-1895). In 1953, American biologist James Dewey Watson (1928-) and English physicist Francis Harry Compton Crick (1916–2004) had discovered that DNA occurs in the cell as a double helix, with two long strands of the molecule wound around each other, and further that the chemical structure of the molecule dictates that adenine (A) always aligns or pairs with thymine (T), and cytosine (C) always pairs with guanine (G). It is this base pairing that allows DNA in a cell to copy itself, and transfer its information to a new cell. The diameter of the helix is 2.0 nm and there is a residue on each chain every 0.34 nm in the z direction. The angle between each residue on the same strand is 36°, so that the structure repeats after 10 residues (3.4 nm) on each strand.

diagenesis    →   dijageneza

Diagenesis is the process that turns sediments into sedimentary rocks. The lithification (literally turning into stone) of the sediments is usually accomplished by a cementing agent. How the weight of the overlying material increases the grains closer together, reducing pore space and eliminating some of the contained water. This water may carry mineral components in solution, and these constituents precipitate as new minerals in the pore spaces. This causes cementation, which will then start to bind the individual particles together. Further compaction and burial may cause recrystallization of the minerals to make the rock even harder.

phenols    →   fenoli

Phenols are compounds having one or more hydroxy groups attached to benzene or other arene ring.

polyens    →   polieni

Polyens are unsaturated acyclic compounds with many conjugated double connections between atoms of carbon (CH₂=CH-CH=CH-CH=CH₂).

polyvalent molecule    →   polivalentna molekula

Polyvalent molecule is a molecule which having multiple binding sites. The antibodies of our immune system are one example.

dipole moment    →   dipolni moment

Electric dipole moment (μ) is a product of the positive charge and the distance between the charges. Dipole moments are often stated in debyes; The SI unit is the coulomb metre. In a diatomic molecule, such as HCl, the dipole moment is a measure of the polar nature of the bond; i.e. the extent to which the average electron charges are displaced towards one atom (in the case of HCl, the electrons are attracted towards the more electronegative chlorine atom). In a polyatomic molecule, the dipole moment is the vector sum of the dipole moments of the individual bonds. In a symmetrical molecule, such as tetrafluoromethane (CF₄) there is no overall dipole moment, although the individual C-F bonds are polar.

disaccharide    →   disaharid

Disaccharides are compounds in which two monosaccharides are joined by a glycosidic bond. A glycosidic bond to the anomeric carbon can be either α or β. For example, maltose, the disaccharide obtained by enzyme-catalyzed hydrolysis of starch, consists of two D-glucopyranose units joined by a 1,4’-α-glycoside bond. The "prime" superscript indicates that C-4 is not in the same ring as C-1. Unlike the other disaccharides, sucrose is not a reducing sugar and does not exhibit mutarotation because the glycosidic bond is between the anomeric carbon of glucose and the anomeric carbon of fructose.

EDTA    →   EDTA

Ethyldiaminetetraacetic acid (C₁₀H₁₆N₂O₈) or shortened EDTA is a hexadentant ligand, and it forms chelates with both transition-metal ions and main-group ions. EDTA is used as a negative ion - EDTA^4-. The diagram shows the structure of the ion with the important atoms picked out. The EDTA ion entirely wraps up a metal ion using all 6 of the positions. The co-ordination number is again 6 because of the 6 co-ordinate bonds being formed by the central metal ion.

EDTA is frequently used in soaps and detergents, because it forms a complexes with calcium and magnesium ions. These ions are in hard water and interfere with the cleaning action of soaps and detergents. EDTA is also used extensively as a stabilizing agent in the food industry and as an anticoagulant for stored blood in blood banks. EDTA is the most common reagent in complexometric titration.

primary alcohol    →   primarni alkohol

Primary alcohols are alcohols where the hydroxyl group is attached to a primary carbon atom. Thus, it has the general structure, RCH₂OH, where R is a hydrogen atom or an alkyl group.