CHEMISTRY GLOSSARY

phase diagram    →   fazni dijagram

Phase diagram is a graphic representation of the equilibrium relationships between phases (such as vapour-liquid, liquid-solid) of a chemical compound, mixture of compounds, or solution.

The figure shows a typical phase diagram of an element or a simple compound. The stability of solid, liquid and gas phases depends on the temperature and the pressure. The three phases are in equilibrium at the triple point. The gas and liquid phases are separated by a phase transition only below the temperature of the critical point.

phenylalanine    →   fenilalanin

Phenylalanine is hydrophobic amino acids with aromatic side chain. It is quite hydrophobic and even the free amino acid is not very soluble in water. Phenylalanine is large aromatic residue that is normally found buried in the interior of a protein and is important for protein stability. It is an essential amino acid, which means that humans cannot synthesize it, so it must be ingested.

• Abbreviations: Phe, F
• IUPAC name: 2-amino-3-phenylpropanoic acid
• Molecular formula: C₉H₁₁NO₂
• Molecular weight: 165.19 g/mol

allotrope    →   alotrop

Allotropes are the elements which exist in two or more different forms in the same physical state. Allotropes generally differ in physical properties and may also differ in chemical activity.

Diamond, graphite and fullerenes are three allotropes of the element carbon. Graphite is a soft, black, slippery substance; by contrast, diamond is one of the hardest substances known. The different properties of the allotropes arise from their chemical structures. Diamonds typically crystallize in the cubic crystal system and consist of tetrahedrally bonded carbon atoms. Graphite crystallizes in the hexagonal system. In the fullerenes, the carbon atoms taking the form of a hollow sphere, ellipsoid, or tube.

In some cases, the allotropes are stable over a temperature range, with a definite transition point at which one changes into the other. For instance, tin has two allotropes: white (metallic) tin stable above 13.2 °C and grey (nonmetallic) tin stable below 13.2 °C.

The term allotropes may also be used to refer to the molecular forms of an element. Ozone is a chemically active triatomic allotrope of the element oxygen.

arginine    →   arginin

Arginine is an electrically charged amino acids with basic side chains. It is one of the least frequent amino acids. As a group the charged amino acids are important for making proteins soluble. These residues are generally located on the surface of the protein. Arginine is well designed to bind the phosphate anion, and is often found in the active centers of proteins that bind phosphorylated substrates. As a cation, arginine, as well as lysine, plays a role in maintaining the overall charge balance of a protein. Although arginine is considered an essential amino acid (it must be obtained through the diet), this is true only during the juvenile period in humans.

• Abbreviations: Arg, R
• IUPAC name: 2-amino-5-(diaminomethylideneamino)pentanoic acid
• Molecular formula: C₆H₁₄N₄O₂
• Molecular weight: 174.20 g/mol

Beer’s law    →   Beerov zakon

Beer’s law (or Beer-Lambert law) is the functional relationship between the quantity measured in an absorption method (A) and the quantity sought, the analyte concentration (c). As a consequence of interactions between the photons and absorbing particles, the power of the beam is attenuated from P_o to P. Beer’s law can be written

where A is the absorbance at a given wavelength of light, ε is the molar absorbtivity or extinction coefficient (L mol^-1 cm^-1), unique to each molecule and varying with wavelength, b is the length of light path through the sample (cm), and c is the concentration of the compound in solution (mol L^-1).

Bragg angle    →   Braggov kut

Bragg angle (Θ) is the angle between an incident X-ray beam and a set of crystal planes for which the secondary radiation displays maximum intensity as a result of constructive interference. British physicist Sir William Henry Bragg and his son Sir William Lawrence Bragg developed a simple relation for scattering angles, now call Bragg’s law.

which relates the angle θ between a crystal plane and the diffracted X-ray beam, the wavelength λ of the x-rays, the crystal plane spacing d, and the diffraction order n (any integer).

The diffraction experiment as presently considered is intended to provide quantitative information on the lattice constant and shape characteristics of the unit cell.

carbohydrate    →   ugljikohidrat

Carbohydrates (often called carbs for short) are polyhydroxy aldehydes or ketones, or substances that yield such compounds on hydrolysis. They are also known as saccharides, a term derived from the Latin word saccharum for sugar. Carbohydrates are the most abundant class of compounds in the biological world, making up more than 50 % of the dry weight of the Earth’s biomass. Every type of food we eat can have its energy traced back to a plant. Plants use carbon dioxide and water to make glucose, a simple sugar, in photosynthesis. Other carbohydrates such as cellulose and starch are made from the glucose. Light from the sun is absorbed by chlorophyll and this is converted to the energy necessary to biosynthesize carbohydrates

The term carbohydrate was applied originally to monosaccharides, in recognition of the fact that their empirical composition can be expressed as C_x(H₂O)_y. Later structural studies revealed that these compounds were not hydrates but the term carbohydrate persists.

Carbohydrates are generally classed as either simple or complex. Simple sugars, or monosaccharides, are carbohydrates that can’t be converted into smaller subunits by hydrolysis. Complex carbohydrates are made of two (disaccharides) or more (oligosaccharides, polysaccharides) simple sugars linked together by acetal (glycosidic) bonds and can be split into the former by hydrolysis.

Carnot cycle    →   Carnotov kružni proces

Carnot cycle is the most efficient cycle of operations for a reversible heat engine. Published in 1824 by French physicist Nicolas Léonard Sadi Carnot (1796-1832), it consists of four operations on the working substance in the engine:

1-2: Isothermal expansion at thermodynamic temperature T₁ with heat Q_H taken in.

2-3: Adiabatic expansion with a fall of temperature to T₂.

3-4: Isothermal compression at temperature T₂ with heat Q_C given out.

4-1: Adiabatic compression at temperature back to T₁.

According to the Carnot principle, the efficiency of any reversible heat engine depends only on the temperature range through which it works, rather than the properties of the working substances.

catalyst    →   katalizator

Catalyst is a substance that increases the rate of a chemical reaction without itself undergoing any permanent chemical change. Catalysts that have the same phase as the reactants are homogenous catalysts (e.g. enzymes in biochemical reactions). Those that have a different phase are heterogeneous catalyst (e.g. metals or oxides used in gas reactions).

The catalyst provides an alternative pathway by which the reaction can proceed, in which the activation energy is lower. In thus increases the rate at which the reaction comes to an equilibrium, although it does not alter the position of the equilibrium.

change of state    →   promjena stanja

Change of state is a physical change which appears when a substance crosses from one state into another. This usually happens because of the change of energy of particles provoked by heating or cooling.