CHEMISTRY GLOSSARY

VSEPR    →   VSEPR

Valence shell electron pair repulsion theory (VSEPR) is a model that explains the shapes of molecules by assuming that electron pairs arrange themselves around atoms in a way that minimizes electron-electron repulsions.

wavefunction    →   valna funkcija

Wavefunction (Ψ) is a mathematical function that gives the amplitude of a wave as a function of position (and sometimes as a function of time and/or electron spin). Wavefunctions are used in chemistry to represent the behaviour of electrons bound in atoms or molecules.

weak electrolyte    →   slabi elektrolit

Weak electrolytes are those electrolytes which in water solutions dissociate only partially, giving ions and which are in equilibrium with undissociated molecules. Their water solutions conduct electric current weakly. For example, acetic acid partially dissociates into acetate ions and hydrogen ions, so that an acetic acid solution contains both molecules and ions.

glutamic acid    →   glutaminska kiselina

Glutamic acid is an electrically charged amino acids. It is one of the two amino acids that contain a carboxylic acid group in its side chains. These acids play important roles as general acids in enzyme active centers, as well as in maintaining the solubility and ionic character of proteins. Glutamic acid is commonly referred to as glutamate, because its carboxylic acid side chain will be deprotonated and thus negatively charged in its anionic form at physiological pH. Glutamic acid is referred to as a non-essential amino acid because a healthy human can synthesize all the glutamic acid needed for normal body function from other amino acids.

• Abbreviations: Glu, E
• IUPAC name: 2-aminopentanedioic acid
• Molecular formula: C₅H₉NO₄
• Molecular weight: 147.13 g/mol

glutamine    →   glutamin

Glutamine is neutral amino acids with polar side chains. It serves as an important carrier of ammonia and contributes it to the formation of urea and purines. Glutamine is not recognized as an essential amino acid but may become conditionally essential in certain situations, including intensive athletic training or certain gastrointestinal disorders. It is synthesized by the enzyme glutamine synthetase from glutamate and ammonia.

• Abbreviations: Gln, Q
• IUPAC name: 2,5-diamino-5-oxopentanoic acid
• Molecular formula: C₅H₁₀N₂O₃
• Molecular weight: 146.14 g/mol

glycine    →   glicin

Glycine is the smallest amino acid and is unique because it lacks a side chain. This gives it more conformational freedom than any other amino acid. Glycine is often found in turns and loops where other amino acids would be sterically unacceptable. Although it is formally nonpolar, it’s very small side chain makes no real contribution to hydrophobic interactions. Glycine is not essential to the human diet, as it is biosynthesized in the body from the amino acid serine.

• Abbreviations: Gly, G
• IUPAC name: 2-aminoacetic acid
• Molecular formula: C₂H₅NO₂
• Molecular weight: 75.07 g/mol

glycogen    →   glikogen

Glycogen (animal starch) is a polysaccharide that serves the same energy storage function in animals that starch serves in plants. Dietary carbohydrates not needed for immediate energy are converted by the body to glycogen for long term storage (principally in muscle and liver cells). Like amylopectin found in starch, glycogen is a polymer of α(1→4)-linked subunits of glucose, with α(1→6)-linked branches. Glycogen molecules are larger than those of amylopectin (up to 100 000 glucose units) and contain even more branches. Branch points occur about every 10 residues in glycogen and about every 25 residues in amylopectin. The branching also creates lots of ends for enzyme attack and provides for rapid release of glucose when it is needed.

glycon    →   glikon

Glycon (glycone) is the sugar component of the glycoside. The link between the glycon and aglycon is known as glycosidic bond.

glycosidic bond    →   glikozidna veza

Glycosidic bond ia a bond between the glycosyl group, the structure obtained by removing the hydroxy group from the hemiacetal function of a monosaccharide, and the -OR group (which itself may be derived from a saccharide and chalcogen replacements thereof (RS–, RSe–). The terms N-glycosides and C-glycosides are misnomers and should not be used. The glycosidic bond can be α or β in orientation, depending on whether the anomeric hydroxyl group was α or β before the glycosidic bond was formed and on the specificity of the enzymatic reaction catalyzing their formation. Once the glycosidic bond is formed, the anomeric configuration of the ring is locked as either α or β. Specific glycosidic bonds therefore may be designated α(1→4), β(1→4), α(1→6), and so on. Cellulose is formed of glucose molecules linked by β(1→4)-glycosidic bonds, whereas starch is composed of α(1→4)-glycosidic bonds.

Gratzel solar cell    →   Gratzelova sunčeva ćelija

Grätzel solar cell is photoelectrochemical cell, developed by Michael Grätzel and collaborators, simulates some characteristics of the natural solar cell, which enables photosynthesis take place. In natural solar cell the chlorophyll molecules absorb light (most strongly in the red and blue parts of the spectrum, leaving the green light to be reflected). The absorbed energy is sufficient to knock an electron from the excited chlorophyll. In the further transport of electron, other molecules are involved, which take the electron away from chlorophyll. In Grätzel cell, the tasks of charge-carrier generation and transport are also assigned to different species.

His device consists of an array of nanometre-sized crystallites of the semiconductor titanium dioxide, welded together and coated with light-sensitive molecules that can transfer electrons to the semiconductor particles when they absorb photons. So, light-sensitive molecules play a role equivalent to chlorophyll in photosynthesis. In Grätzel cell, the light-sensitive molecule is a ruthenium ion bound to organic bipyridine molecules, which absorb light strongly in the visible range; titanium dioxide nanocrystals carry the received photoexcited electrons away from electron donors. On the other hand, a donor molecule must get back an electron, so that it can absorb another photon. So, this assembly is immersed in a liquid electrolyte containing molecular species (dissolved iodine molecules) that can pick up an electron from an electrode immersed in the solution and ferry it to the donor molecule. These cells can convert sunlight with efficiency of 10 % in direct sunlight and they are even more efficient in diffuse daylight.