CHEMISTRY GLOSSARY

monosaccharide    →   monosaharid

Monosaccharides are carbohydrates, with the general formula C_n(H₂O)_n, that cannot be decomposed to a simpler carbohydrates by hydrolysis.

Depending on whether the molecule contains an aldehyde group (-CHO) or a ketone group (-CO-) monosaccharide can be a polyhydroxy aldehyde (aldose) or a polyhydroxy ketone (ketose). These aldehyde and ketone groups confer reduction properties on monosaccharides. They are also classified according to the number of carbon atoms they contain: trioses have three carbon atoms, tetroses four, pentoses five, hexoses six, heptoses seven, etc. These two systems of classification are often combined. For example, a six-carbon polyhydroxy aldehyde such as D-glucose is an aldohexose, whereas a six-carbon polyhydroxy ketone such as D-fructose is a ketohexose.

The notations D and L are used to describe the configurations of carbohydrates. In Fischer projections of monosaccharides, the carbonyl group is always placed on top (in the case of aldoses) or as close to the top as possible (in the case of ketoses). If the OH group attached to the bottom-most asymmetric carbon (the carbon that is second from the bottom) is on the right, then the compound is a D-sugar. If the OH group is on the left, then the compound is an L-sugar. Almost all sugars found in nature are D-sugars.

Monosaccharides can exist as either straight-chain or ring-shaped molecules. During the conversion from straight-chain form to cyclic form, the carbon atom containing the carbonyl oxygen, called the anomeric carbon, becomes a chiral center with two possible configurations (anomers), α and β. When the stereochemistry of the first carbon matches the stereochemistry of the last stereogenic center the sugar is the α-anomer when they are opposite the sugar is the β-anomer.

mutarotation    →   mutarotacija

Mutarotation is the change in optical rotation accompanying epimerization. In carbohydrate chemistry this term usually refers to epimerization at the hemiacetal carbon atom. In general α- and β-form are stable solids, but in solution they rapidly equilibrate. For example, D-glucose exists in an equilibrium mixture of 36 % α-D-glucopyranose and 64 % β-D-glucopyranose, with only a tiny fraction in the open-chain form. The equilibration occurs via the ring opening of the cyclic sugar at the anomeric center with the acyclic form as the intermediate. Mutarotation was discovered by French chemist Augustin-Pierre Dubrunfaut (1797-1881) in 1846.

octahedral molecular geometry    →   oktaedarska geometrija molekule

Octahedral molecular geometry (square bipyramidal shape) describes the shape of compounds where six atoms or ligands are symmetrically arranged around a central atom. The sulfur hexafluoride (SF₆), with six bonding pairs, is predicted and found to be a regular octahedron. Four of the attachments are positioned in a square plane with 90° bond angles. The remaining two attachments are positioned perpendicular (90°) to the square plane at opposite ends of the central atom. Molecules with an octahedral electron pair geometries have sp³d² (or d²sp³) hybridization at the central atom.

picnometer    →   piknometar

Picnometer is a special glass flask which is used for determining a relative density of liquids using the weight of a known volume. It usually has a glass faceted cork which is pierced in the centre like a thin capillary through which surplus of liquid runs out.

Newton’s gravitational law    →   Newtonov zakon gravitacije

Every object in the universe attracts every other object with a force (gravitational force F_G) directed along the line through centres of the two objects that is proportional to the product of their masses and inversely proportional to the square of the distance between them.

m₁ and m₂ are masses of the two objects and r is the distance between them. G is universal constant of gravitation, which equals 6.67•10^-26 N m² kg^-2. Strictly speaking, this law applies only to objects that can be considered pointlike object. Otherwise, the force has to be found by integrating the forces between various mass elements.

It is more properly to express Newton’s gravitational law by vector equation:

in which r₁ and r₂ are position vectors of masses m₁ and m₂.

Gravitational forces act on distance. Newton’s gravitational law is derived from Kepler’s law for planetary motion, using a physical assumption considering Sun as the centre and the source of gravitational force.

Additionally, every object moves in the direction of the force acting on it, with acceleration that is inversely proportional to the mass of object. For bodies on the surface of Earth, the distance r in gravitational law formula is practically equal to the Earth radius, R_E. If the mass of the body on Earth surface is m and the mass of earth is M_E, the gravitational force acting on that body can be expressed as:

where g is gravitational acceleration which is, although dependent on geographical latitude, usually considered as constant equal to 9.81 m s^-2.

polar molecule    →   polarna molekula

Polar molecules are molecules at which centres of gravity of positive and negative charge are not in the same point.

porphyrin    →   porfirin

Porphyrin is a planar ligand with a central ring structure and various substituent groups at the edges of the ring.

referent electrode    →   referentna elektroda

Referent electrode is an electrode whose potential is known and completely independent of analyte concentration. Mostly used referent electrodes are calomel and silver/silver chloride electrode.

Table: Dependence of referent electrodes potentials on KCl concentration

retardation factor    →   faktor zaostajanja

Retardation factor, R_F, (in planar chromatography) is a ratio of the distance travelled by the centre of the spot to the distance simultaneously travelled by the mobile phase:

The R_F value is characteristic for any given compound on the same stationary phase using the same mobile phase for development of the plates. Hence, known R_F values can be compared to those of unknown substances to aid in their identifications.

square planar molecular geometry    →   kvadratna planarna geometrija molekule

Square planar is a molecular shape that results when there are four bonds and two lone pairs on the central atom in the molecule. An example of a square planar molecule is xenon tetrafluoride (XeF₄). This molecule is made up of six equally spaced sp³d² (or d²sp³) hybrid orbitals arranged at 90° angles. The shape of the orbitals is octahedral. Two orbitals contain lone pairs of electrons on opposite sides of the central atom. The remaining four atoms connected to the central atom give the molecule a square planar shape.