CHEMISTRY GLOSSARY

Daniell cell    →   Daniellov članak

In 1836 the British chemist John Frederic Daniell (1790-1845) proposed an improved electric cell that supplied an even current during continuous operation. Daniell cell consisted of a glass jar containing copper and zinc electrodes, each immersed in their respective acidic sulphate solutions. The two solutions were separated by a porous clay cylinder separator. It was a galvanic cell in which the spontaneous electrodissolution of zinc and electroplating of copper provided the electrical current.

epimer    →   epimer

Epimers are diastereoisomers that have the opposite configuration at only one of two or more chiral centers present in the respective molecular entities. For example D-glucose and D-mannose, which differ only in the stereochemistry at C-2, are epimers, as are D-glucose and D-galactose (which differ at C-4).

glutamic acid    →   glutaminska kiselina

Glutamic acid is an electrically charged amino acids. It is one of the two amino acids that contain a carboxylic acid group in its side chains. These acids play important roles as general acids in enzyme active centers, as well as in maintaining the solubility and ionic character of proteins. Glutamic acid is commonly referred to as glutamate, because its carboxylic acid side chain will be deprotonated and thus negatively charged in its anionic form at physiological pH. Glutamic acid is referred to as a non-essential amino acid because a healthy human can synthesize all the glutamic acid needed for normal body function from other amino acids.

• Abbreviations: Glu, E
• IUPAC name: 2-aminopentanedioic acid
• Molecular formula: C₅H₉NO₄
• Molecular weight: 147.13 g/mol

hexagonal close-packed structure    →   heksagonska gusta slagalina

In a hexagonal close-packed (hcp) arrangement of atoms, the unit cell consists of three layers of atoms. The top and bottom layers (a) contain six atoms at the corners of a hexagon and one atom at the center of each hexagon. The middle layer (b) contains three atoms nestled between the atoms of the top and bottom layers, hence, the name close-packed. The hexagonal close packed structure can be made by piling layers in the a-b-a-b-a-b... sequence.

hexagonal lattice    →   heksagonska rešetka

Hexagonal lattice has lattice points at the twelve corners of the hexagonal prism and at the centers of the two hexagonal faces of the unit cell. It has unit cell vectors a=b≠c and interaxial angles α=β=90° and γ=120°.

ionic radius    →   ionski radijus

Ionic radius is the radius of anions and cations in crystalline ionic compounds, as determined by consistently partitioning the center-to-center distance of ions in those compounds. In general, negative ions have larger ionic radii than positive ions.

ligand    →   ligand

Ligand is an ion (F^-, Cl^-, Br^-, I^-, S^2-, CN^-, NCS^-, OH^-, NH₂^-) or molecule (NH₃, H₂O, NO, CO) that donates a pair of electrons to a metal atom or ion in forming a coordination complex. The main way of classifying ligands is by the number of points at which they are attached to, or bound to, the metal center. This is the denticity. Ligands with one potential donor atom are monodentate. Polydentate ligand is a ligand that is attached to a central metal ion by bonds from two or more donor atoms. Ligands with more than one potential donor atom are known as ambidentate, such as the thiocyanate ion, NCS-, which can bind to the metal center with either the nitrogen or sulphur atoms. Chelating ligands are those polydentate ligands which can form a ring including the metal atom.

lysine    →   lizin

Lysine is an electrically charged amino acids with basic side chains. Lysine is a base, as are arginine and histidine. The amino group is highly reactive and often participates in reactions at the active centers of enzymes. Lysine plays an important role in coordinating negatively charged ligands. It is an essential amino acid, which means that humans cannot synthesize it, so it must be ingested.

• Abbreviations: Lys, K
• IUPAC name: 2,6-diaminohexanoic acid
• Molecular formula: C₆H₁₄N₂O₂
• Molecular weight: 146.19 g/mol

monosaccharide    →   monosaharid

Monosaccharides are carbohydrates, with the general formula C_n(H₂O)_n, that cannot be decomposed to a simpler carbohydrates by hydrolysis.

Depending on whether the molecule contains an aldehyde group (-CHO) or a ketone group (-CO-) monosaccharide can be a polyhydroxy aldehyde (aldose) or a polyhydroxy ketone (ketose). These aldehyde and ketone groups confer reduction properties on monosaccharides. They are also classified according to the number of carbon atoms they contain: trioses have three carbon atoms, tetroses four, pentoses five, hexoses six, heptoses seven, etc. These two systems of classification are often combined. For example, a six-carbon polyhydroxy aldehyde such as D-glucose is an aldohexose, whereas a six-carbon polyhydroxy ketone such as D-fructose is a ketohexose.

The notations D and L are used to describe the configurations of carbohydrates. In Fischer projections of monosaccharides, the carbonyl group is always placed on top (in the case of aldoses) or as close to the top as possible (in the case of ketoses). If the OH group attached to the bottom-most asymmetric carbon (the carbon that is second from the bottom) is on the right, then the compound is a D-sugar. If the OH group is on the left, then the compound is an L-sugar. Almost all sugars found in nature are D-sugars.

Monosaccharides can exist as either straight-chain or ring-shaped molecules. During the conversion from straight-chain form to cyclic form, the carbon atom containing the carbonyl oxygen, called the anomeric carbon, becomes a chiral center with two possible configurations (anomers), α and β. When the stereochemistry of the first carbon matches the stereochemistry of the last stereogenic center the sugar is the α-anomer when they are opposite the sugar is the β-anomer.

mutarotation    →   mutarotacija

Mutarotation is the change in optical rotation accompanying epimerization. In carbohydrate chemistry this term usually refers to epimerization at the hemiacetal carbon atom. In general α- and β-form are stable solids, but in solution they rapidly equilibrate. For example, D-glucose exists in an equilibrium mixture of 36 % α-D-glucopyranose and 64 % β-D-glucopyranose, with only a tiny fraction in the open-chain form. The equilibration occurs via the ring opening of the cyclic sugar at the anomeric center with the acyclic form as the intermediate. Mutarotation was discovered by French chemist Augustin-Pierre Dubrunfaut (1797-1881) in 1846.