CHEMISTRY GLOSSARY

toxin    →   toksin

Toxins are effective and specific poisons produced by living organisms. They usually consist of an amino acid chain which can vary in molecular weight between a couple of hundred (peptides) and one hundred thousand (proteins). They may also be low-molecular organic compounds. Toxins are produced by numerous organisms, e.g., bacteria, fungi, algae and plants. Many of them are extremely poisonous, with a toxicity that is several orders of magnitude greater than the nerve agents. Botulinum toxin, produced by the bacteria Clostridium botulinum, is the most poisonous substance known.

tyrosine    →   tirozin

Tyrosine is hydrophobic amino acids with aromatic side chain. Tyrosine is large aromatic residue that is normally found buried in the interior of a protein and is important for protein stability. Tyrosine has special properties since its hydroxyl side chain may function as a powerful nucleophile in an enzyme active site (when ionized) and is a common site for phosphorylation in cell signaling cascades. Tyrosine absorbs ultraviolet radiation and contributes to the absorbance spectra of proteins. It is not essential (or semi-essential) to the human diet, since it is synthesized in the body from other metabolites.

• Abbreviations: Tyr, Y
• IUPAC name: 2-amino-3-(4-hydroxyphenyl)propanoic acid
• Molecular formula: C₉H₁₁NO₃
• Molecular weight: 181.19 g/mol

water    →   voda

Water (H₂O) (dihydrogen oxide) is a binary compound that occurs at room temperature as a clear colorless odorless tasteless liquid; freezes into ice below 0 °C and boils above 100 °C. Water is a chemical compound which is essential for living organisms and it is widely used as a solvent.

Wilson’s chamber    →   Wilsonova komora

Wilson’s chamber is used for detection of radioactive radiation. Wilson’s chamber has a glass cylinder filled with air that has been saturated with water vapour. Radioactive radiation in its way ionises molecules of gas which then function as centres on which water vapour condenses into very small drops, thereupon showing Tyndall’s effect, i.e. is they are visible as a bright trail.

X-rays    →   X-zrake

X-rays are electromagnetic radiation of shorter wavelength than ultraviolet radiation (10^-11 m to 10^-9 m or 0.01 nm to 1 nm) produced by bombardment of atoms by high-quantum-energy particles. X-rays can pass through many forms of matter and they are therefore used medically and industrially to examine the internal structure.

zwitterion    →   dipolarni ion

Zwitterion, also known as inner salt or dipolar ion, is an ion with a positive and a negative electrical charge at different locations within a molecule. As the molecule contains two opposite charges, it is electrically neutral. The term zwitterion is derived from the German word zwitter, meaning a hybrid, hermaphrodite. Zwitterions can be formed from compounds that contain both acid groups and base groups in their molecules (ampholytes).

All of the common amino acids found in proteins are ampholytes because they contain a carboxyl group (-COOH) that acts as an acid and an amino group (-NH₂) that acts as a base. In the solid state, amino acids exist in the dipolar or zwitterion form. If acid is added to a solution containing the zwitterion, the carboxylate group captures a hydrogen (H⁺) ion, and the amino acid becomes positively charged. If base is added, ion removal of the H⁺ ion from the amino group of the zwitterion produces a negatively charged amino acid.

Lennard-Jones potential    →   Lennard-Jonesov potencijal

The Lennard-Jones potential (or 12-6 potential) is a mathematically simple model that describes the interaction between two non-bonded and uncharged atoms (known as the van der Waals interaction). It was first proposed in 1924 by British physicist Sir John Edward Lennard-Jones (1894-1954). The Lennard-Jones Potential is given by the following equation

where V is the intermolecular potential between the two atoms or molecules, ε is the well depth and a measure of how strongly the two particles attract each other, σ is the distance at which the intermolecular potential between the two particles is zero, r is the distance of separation between centres of both particles.

Chitin    →   Hitin

Chitin is a nitrogen-containing linear polysaccharide of ß(1->4) linked units of N-acetyl-ß-d-glucosamine. The structure of chitin is similar to cellulose except for the replacement hydroxyl group (-OH) at the carbon 2 with an acetyl amine group (–NH–CO–CH3). Chitin is the main component of the exoskeleton, or outer covering of insects, crustaceans, and arachnids. It is also found in the cell walls of certain fungi and algae. After cellulose, chitin is the second most abundant biopolymer in nature. It is insoluble in water, organic solvents, weak acids and lyes.