CHEMISTRY GLOSSARY

polymorphism    →   polimorfija

Polymorphism is the ability of a solid substance to crystallise into more than one different crystal structure. Different polymorphs have different arrangements of atoms within the unit cell, and this can have a profound effect on the properties of the final crystallised compound. The change that takes place between crystal structures of the same chemical compound is called polymorphic transformation.

The set of unique crystal structures a given compound may form are called polymorphs. Calcium carbonate is dimorphous (two forms), crystallizing as calcite or aragonite. Titanium dioxide is trimorphous; its three forms are brookite, anatase, and rutile. The prevailing crystal structure depends on both the temperature and the external pressure.

Iron is a metal with polymorphism structure. Each structure stable in the range of temperature, for example, when iron crystallizes at 1 538 °C it is bcc (δ-iron), at 1 394 °C the structure changes to fcc (γ-iron or austenite), and at 912 °C it again becomes bcc (α-iron or ferrite).

Polymorphism of an element is called allotropy.

polystyrene    →   polistiren

Polystyrene is a vinyl polymer. Structurally, it is a long hydrocarbon chain, with a phenyl group attached to every other carbon atom. Polystyrene is produced by free radical vinyl polymerization, from the monomer styrene. Polystyrene or Styrofoam is used in the construction industry as insulating material and for production of containers.

porphyrin    →   porfirin

Porphyrin is a planar ligand with a central ring structure and various substituent groups at the edges of the ring.

proline    →   prolin

Proline has an aliphatic side chain with a distinctive cyclic structure. It is unusual because it is conformationally restricted. The secondary amino (imino) group of proline residues is held in a rigid conformation that reduces the structural flexibility of polypeptide regions containing proline. It is not an essential amino acid, which means that the human body can synthesize it.

• Abbreviations: Pro, P
• IUPAC name: pyrrolidine-2-carboxylic acid
• Molecular formula: C₅H₉NO₂
• Molecular weight: 115.13 g/mol

resonance    →   rezonancija

Resonance is a stabilising quality of certain molecules that can be represented by considering the electron distribution in an ion or molecule as a composite of two or more forms, in those cases where a single form is an inadequate representation; for example, benzene and the carbonate ion. A various canonical structures can be drawn to show how electron delocalisation will explain the discrepancy, the difference in electron density

ribonucleic acid    →   ribonukleinska kiselina

Ribonucleic acid is a complex organic compound in living cells that is concerned with protein synthesis. Plays an intermediary role in converting the information contained in DNA into proteins. RNA carries the genetic information from DNA to those parts of the cell where proteins are made. Some viruses store their genetic information as RNA not as DNA.

Ribonucleic acid is a similar molecule to DNA but with a slightly different structure.

The structural difference with DNA is that RNA contains a -OH group both at the 2' and 3' position of the ribose ring, whereas DNA (which stands, in fact, for deoxy-RNA) lacks such a hydroxy group at the 2' position of the ribose. The same bases can be attached to the ribose group in RNA as occur in DNA, with the exception that in RNA thymine does not occur, and is replaced by uracil, which has an H-group instead of a methyl group at the C-5 position of the pyrimidine. Unlike the double-stranded DNA molecule, RNA is a single-stranded molecule.

The three main functionally distinct varieties of RNA molecules are: (1) messenger RNA (mRNA) which is involved in the transmission of DNA information, (2) ribosomal RNa (rRNA) which makes up the physical machinery of the synthetic process, and (3) transfer RNA (tRNA) which also constitutes another functional part of the machinery of protein synthesis.

simple cubic lattice    →   jednostavna kubična rešetka

Simple or primitive cubic lattice (sc or cubic-P) has one lattice point at the each corner of the unit cell. It has unit cell vectors a = b = c and interaxial angels α=β=γ=90°.

The simplest crystal structures are those in which there is only a single atom at each lattice point. In the sc structures the spheres fill 52 % of the volume. The number of atoms in a unit cell is one (8×1/8 = 1). This is only one metal (α-polonium) that have the sc lattice.

tautomerism    →   tautomerija

Tautomerism refers to equilibrium between two different structures of the same compound. Usually the tautomers differ in the point of attachment of a hydrogen atom. One of the most common examples of a tautomeric system is the equilibrium between a ketone (keto) and aldehyde (enol).

thermosetting plastic    →   termostabilna plastika

Thermosetting plastics (thermosets) refer to a range of polymer materials that cure, through the addition of energy, to a stronger form. The energy may be in the form of heat (rubber), through a chemical reaction (two part epoxy), or irradiation. Thermoset materials are usually liquid or malleable prior to curing, and designed to be molded into their final form, or used as adhesive.

Thermoset polymer resins transformed into plastics or rubbers by cross-linking into a rigid, 3-D structure. A thermoset material cannot be melted and re-molded after it is cured.

tryptophan    →   triptofan

Tryptophan is hydrophobic amino acids with aromatic side chain. Tryptophan is large aromatic residue that is normally found buried in the interior of a protein and is important for protein stability. Tryptophan has the largest side chain and is the least common amino acid in proteins. It has spectral properties that make it the best inherent probe for following protein folding and conformational changes associated with biochemical processes. It is an essential amino acid, which means that humans cannot synthesize it, so it must be ingested.

• Abbreviations: Trp, W
• IUPAC name: 2-amino-3-(1H-indol-3-yl)propanoic acid
• Molecular formula: C₁₁H₁₂N₂O₂
• Molecular weight: 204.23 g/mol