CHEMISTRY GLOSSARY

lysine    →   lizin

Lysine is an electrically charged amino acids with basic side chains. Lysine is a base, as are arginine and histidine. The amino group is highly reactive and often participates in reactions at the active centers of enzymes. Lysine plays an important role in coordinating negatively charged ligands. It is an essential amino acid, which means that humans cannot synthesize it, so it must be ingested.

• Abbreviations: Lys, K
• IUPAC name: 2,6-diaminohexanoic acid
• Molecular formula: C₆H₁₄N₂O₂
• Molecular weight: 146.19 g/mol

measuring cylinder    →   menzura

Measuring cylinders (graduated cylinders) are graduated glass cylinders with a capacity from 2 mL to 2 L. They are used when reagent solutions for volume measuring are prepared when accuracy is not of great relevance. The larger the measuring cylinder, the bigger the measuring error.

methyl orange    →   metil oranž

Methyl orange is an acid-base indicator, in acid it turns red and in a base it turns yellow.

non-metal    →   nemetal

Non-metals are defined as elements that are not metals.

Their physical properties generally include:

• They are poor conductors.
• They are brittle, not ductile in their solid state.
• They show no metallic lustre.
• They may be transparent or translucent.
• They have low density.
• They form molecules which consists of atoms covalently bonded; the noble gases are monoatomic.

Their chemical properties are generally:

• They usually have four to eight valence electrons.
• They have high electron affinities (except the noble gases)
• They are good oxidising agents (except the noble gases)
• They have hydroxides which are acidic (except the noble gases)
• They are electronegative.

nucleic acid    →   nukleinska kiselina

Nucleic acids are a complex, high-molecular-weight biochemical macromolecules composed of nucleotide chains that convey genetic information. The most common nucleic acids are deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). Each nucleic acid chain is composed of subunits called nucleotides, each containing a sugar, a phosphate group, and nitrogenous base. DNA was first discovered in 1869 by the Swiss biochemist Friedrich Miescher (1844-1895).

Both DNA and RNA contain the two major purine bases adenine (A) and guanine (G) and one of the major pyrimidines, cytosine (C). Of the other two pyrimidines, thymine (T) is found in DNA and uracil (U) is found in RNA. There are two major pentoses in nucleic acids:2'-deoxy-D-ribose in DNA and D-ribose in RNA.

Nucleotides are linked together in both DNA and RNA in a polymeric fashion via covalent bonds. These bonds exist through phosphate-group bridges in which the 5' hydroxyl group of one nucleotide unit is joined to the 3' hydroxyl group of the next nucleotide. RNA is usually a single-stranded molecule, whereas DNA is usually double-stranded.

nucleotide    →   nukleotid

Nucleotides are the components that made up nucleic acids. They have three major components: the first component is a nitrogenous base, which is derivative of one of two parent compounds, pyrimidine or purine; the second is a pentose, or five carbon sugar group; the third is a unit of phosphate. Each group of three nucleotides in a gene is known as a codon. Whenever the phosphate group is not present, a nucleotide becomes a nucleoside.

Ostwald’s viscometer    →   Ostwaldov viskozimetar

Ostwald viscometer, also known as U-tube viscometer or capillary viscometer is a device used to measure the viscosity of the liquid with a known density. The method of determining viscosity with this instrument consists of measuring the time for a known volume of the liquid (the volume contained between the marks A and B) to flow through the capillary under the influence of gravity. Ostwald viscometers named after the German chemist Wilhelm Ostwald (1853-1932).

The instrument must first be calibrated with materials of known viscosity such as pure (deionized) water. Knowing the value of viscosity of one liquid, one can calculate the viscosity of other liquid.

where η₁ and η₂ are viscosity coefficients of the liquid and water, and ρ₁ and ρ₂ are the densities of liquid and water, respectively.

phenylalanine    →   fenilalanin

Phenylalanine is hydrophobic amino acids with aromatic side chain. It is quite hydrophobic and even the free amino acid is not very soluble in water. Phenylalanine is large aromatic residue that is normally found buried in the interior of a protein and is important for protein stability. It is an essential amino acid, which means that humans cannot synthesize it, so it must be ingested.

• Abbreviations: Phe, F
• IUPAC name: 2-amino-3-phenylpropanoic acid
• Molecular formula: C₉H₁₁NO₂
• Molecular weight: 165.19 g/mol

pipette    →   pipeta

Pipettes are glass tubes which are tapers towards at both ends into narrow opened tubes. According to their design two types of pipettes can be distinguished:

Volumetric pipettes

Volumetric pipettes (transfer or belly pipette) are used in volumetric analysis, when there is a need for taking exact smaller volume of a sample solution or reagent. The upper tube of volumetric pipette has a ringlike marking (mark) which marks its calibrated volume. Pipettes calibrated to deliver (TD or Ex) the indicated volume. By sucking in (with mouth, propipette or a water pump) the liquid is pulled in a little bit above the mark and the opening of the pipet is closed with a forefingertip. Outer wall of pipet is wiped and, with a slight forefinger loosening, the liquid is released until it reaches the mark. Mark must figure as a tangent on a lower edge of the liquid meniscus. A pipette is emptied out by lifting the forefinger off and letting the liquid flow out of the pipette freely. After another 15 s and the tip of the pipette is pulled onto the inner wall of the vessel. It is absolutely forbidden to blow out the contents of the pipette

Graduated pipettes

Graduated pipettes (Mohr pipette) have a scale divided into units of one and of 1/10th of a millilitre. Because of their wide necks it is less accurate than the volumetric pipette. They are used when taking volume of solutions in which accuracy does not have to be very high. They are filled in the same way as volumetric ones and liquid can be gradually released.

poison    →   otrov

Poisons are substance, which upon contact or being introduced into an organism, impair or prevent normal metabolic processes from taking place, thus altering the normal functioning of organs or tissues.

Poisons are molecules or material that tends to collect on a catalyst surface, blocking access to active sites or destroying their activities.

Poisons are substance that can reduce a nuclear reaction by absorbing neutrons, thereby preventing more fission. If enough poisons are present in a reactor core, the chain reaction will die out.