CHEMISTRY GLOSSARY

nonpolar molecule    →   nepolarna molekula

Nonpolar molecule is a molecule which has no separation of charge, so no positive or negative poles are formed. For example, the Cl₂ molecule has no polar bonds (molecule with one type of atom), CH₄ is a non-polar molecule (due to its symmetry). Nonpolar molecules do not dissolve in water as they cannot form hydrogen bonds (thus are hydrophobic) but do dissolve in lipids or fats (lipophilic).

polar molecule    →   polarna molekula

Polar molecules are molecules at which centres of gravity of positive and negative charge are not in the same point.

relative molecular mass    →   relativna molekularna masa

Relative molecular mass (M_r) is the ratio of the average mass per molecule or specified entity of a substance to 1/12 of the mass of nuclide ¹²C. Also called molecular weight. It is equal to the sum of the relative atomic masses of all the atoms that comprise a molecule. For example

M_r(H₂SO₄) = 2·A_r(H) + A_r(S) + 4·A_r(O)

= 2·1.0079 + 32.066 + 4·15.999

= 2.0158 + 32.066 + 63.996

= 98.078

crystal    →   kristal

Crystal is a solid with a regular geometric shape, having a characteristic internal structure and enclosed by symmetrically arranged plane surfaces, intersecting at definite and characteristic angles. In crystals the particles (atoms, ions, or molecules) have a regular three-dimensional repeating arrangement in space. This is called the crystal structure. The crystal lattice is the arrangement of points in space at which the particles are positioned.

conformation    →   konformacija

Conformation is one of the very large numbers of possible spatial arrangements of atoms that can be interconverted by rotation about a single bond in a molecule. The conformation of a molecule is not fixed, though one or another shape may be more likely to occur. There are two extreme cases:

Staggered conformation (antiperiplanar) is a conformation about a carbon-carbon single bond in which the atoms on one carbon are as far apart as possible from the atoms on an adjacent carbon.

Eclipsed conformation (syn-periplanar) is a conformation about a carbon-carbon single bond in which the atoms on one carbon are as close as possible to the atoms on an adjacent carbon.

glucose    →   glukoza

Glucose (grape sugar, blood sugar), C₆H₁₂O₆, is an aldohexose (a monosaccharide sugar having six carbon atoms and an aldehyde group). An older common name for glucose is dextrose, after its dextrorotatory property of rotating plane polarized light to the right. Glucose in free (in sweet fruits and honey) or combined form (sucrose, starch, cellulose, glycogen) is is probably the most abundant organic compound in nature. During the photosynthesis process, plants use energy from the sun, water from the soil and carbon dioxide gas from the air to make glucose. In cellular respiration, glucose is ultimately broken down to yield carbon dioxide and water, and the energy from this process is stored as ATP molecules (36 molecules of ATP across all processes).

Naturally occurring glucose is D isomers (OH group on the stereogenic carbon farthest from the aldehyde group, C-5, is to the right in the Fischer projection). Although often displayed as an open chain structure, glucose and most common sugars exist as ring structures. In the α form, the hydroxyl group attached to C-1 and the CH₂OH attached to C-5 are located on opposite sides of the ring. β-glucose has these two groups on the same side of the ring. The full names for these two anomers of glucose are α-D-glucopyranose and β-D-glucopyranose.

absorbance    →   apsorbancija

Absorbance (A) is a logarithm of the ratio of incident radiant power (P_o) to transmitted radiant power (P) through a sample (excluding the effects on cell walls).

The absorption of light by a substance in a solution can be described mathematically by the Beer-Lambert law

where A is the absorbance at a given wavelength of light, ε is the molar absorbtivity or extinction coefficient (L mol^-1 cm^-1), unique to each molecule and varying with wavelength, b is the length of light path through the sample (cm), and c is the concentration of the compound in solution (mol L^-1).

acceptor    →   akceptor

Acceptor is a compound, molecule or ion, to which electrons are donated in the formation of a coordinate bond

activation energy    →   energija aktivacije

Activation energy (E_a) is the energy that must be added to a system in order for a process to occur, even though the process may already be thermodynamically possible. In chemical kinetics, the activation energy is the height of the potential barrier separating the products and reactants. It determines the temperature dependence on the reaction rate.

active site    →   aktivno mjesto

Active site is a pocket or crevice on an enzyme molecule that fits reactant molecules like a hand in a glove. The active site lowers the activation energy for reaction