CHEMISTRY GLOSSARY

thermometer    →   termometar

Thermometers are devices for measuring temperature. Linear and volume thermal expansion are macroscopic properties of matter, which can be easily measured, relative to measurements of microscopic properties, on the basis of which, temperature is defined. Thermometers based on thermal expansion are secondary instruments that is, they have to be calibrated in comparison to a standard thermometer. In a thermometer with liquid, mercury or alcohol is placed in a small glass container. If temperature increases, the liquid undergoes volume expansion and rises in a capillary. The level of the raised liquid is the measure of temperature. Mercury thermometers measure temperatures in the temperature range between -39 °C and 300 °C. Alcohol thermometers measure lower temperatures. Bimetal thermometers have a spiral spring, which consists of two metals with different coefficients of linear expansion. When temperature changes, metals undergo different change in length and the consequence twisting of the spring is transferred to a pointer, the deflection of which is the measure of temperature.

threonine    →   treonin

Threonine is neutral amino acids with polar side chains. It differs from serine by having a methyl substituent in place of one of the hydrogens on the β carbon. Threonine is a site of phosphorylation and glycosylation which is important for enzyme regulation and cell signaling. It is an essential amino acid, which means that humans cannot synthesize it, so it must be ingested.

• Abbreviations: Thr, T
• IUPAC name: 2-amino-3-hydroxybutanoic acid
• Molecular formula: C₄H₉NO₃
• Molecular weight: 119.12 g/mol

toxin    →   toksin

Toxins are effective and specific poisons produced by living organisms. They usually consist of an amino acid chain which can vary in molecular weight between a couple of hundred (peptides) and one hundred thousand (proteins). They may also be low-molecular organic compounds. Toxins are produced by numerous organisms, e.g., bacteria, fungi, algae and plants. Many of them are extremely poisonous, with a toxicity that is several orders of magnitude greater than the nerve agents. Botulinum toxin, produced by the bacteria Clostridium botulinum, is the most poisonous substance known.

tryptophan    →   triptofan

Tryptophan is hydrophobic amino acids with aromatic side chain. Tryptophan is large aromatic residue that is normally found buried in the interior of a protein and is important for protein stability. Tryptophan has the largest side chain and is the least common amino acid in proteins. It has spectral properties that make it the best inherent probe for following protein folding and conformational changes associated with biochemical processes. It is an essential amino acid, which means that humans cannot synthesize it, so it must be ingested.

• Abbreviations: Trp, W
• IUPAC name: 2-amino-3-(1H-indol-3-yl)propanoic acid
• Molecular formula: C₁₁H₁₂N₂O₂
• Molecular weight: 204.23 g/mol

tyrosine    →   tirozin

Tyrosine is hydrophobic amino acids with aromatic side chain. Tyrosine is large aromatic residue that is normally found buried in the interior of a protein and is important for protein stability. Tyrosine has special properties since its hydroxyl side chain may function as a powerful nucleophile in an enzyme active site (when ionized) and is a common site for phosphorylation in cell signaling cascades. Tyrosine absorbs ultraviolet radiation and contributes to the absorbance spectra of proteins. It is not essential (or semi-essential) to the human diet, since it is synthesized in the body from other metabolites.

• Abbreviations: Tyr, Y
• IUPAC name: 2-amino-3-(4-hydroxyphenyl)propanoic acid
• Molecular formula: C₉H₁₁NO₃
• Molecular weight: 181.19 g/mol

U-tube manometer    →   U-manometar

U-tube manometer contains water or mercury in a U-shaped tube, and is usually used to measure gas pressure. One end of the U tube is exposed to the unknown pressure field (P) and the other end is connected to a reference pressure source (usually atmospheric pressure) (P_ref), shown in the schematic below.

If fluid C is the atmosphere, fluid B is the liquid in the U tube (e.g. water or mercury), and fluid A is a gas, then we can assume that ρB >> ρA, ρC. The pressure contributed by the weight of gas within the U tube can therefore be neglected. The gage pressure of the gas can be approximated by,

volumetric flask    →   odmjerna tikvica

Volumetric flasks are bottles made of glass, in a pear like in shape with long thin necks and flat bottoms. All come with a ground glass stopper for a tight seal. Volume marking is cut in glass with fluoride acid around the neck, so that parallax should be avoided (flask is put in front of the eyes so that one can see only a straight horizontal line). A volumetric flask is calibrated to contain (TC or In) the indicated volume of water at 20 °C when the bottom of the meniscus is adjusted to just rest on the center of the line marked on the neck of the flask. They are used for preparing the exactly known volume of sample solution and standard solutions of reagents. On each flask with volume designation a temperature on which the flask has been calibrated is designated.

Chitosan    →   Kitozan

Chitosan is a linear polysaccharide composed of randomly distributed N-acetyl D-glucosamine and D-glucosamine units. It can be easily derived from partial deacetylation of natural polymer chitin. At a minimum deacetylization level of 60 % (amount of free amino groups in the polymer) it is considered to be chitosan. Thanks to the amino groups of D-glucosamine, chitosan can be protonated and turned into polycation, which is one of the sources of unique properties of chitosan as biopolymer, like aqueous solubility, antibacterial properties, biodegradability with non-toxic residues and biocompatibility.

Chitin    →   Hitin

Chitin is a nitrogen-containing linear polysaccharide of ß(1->4) linked units of N-acetyl-ß-d-glucosamine. The structure of chitin is similar to cellulose except for the replacement hydroxyl group (-OH) at the carbon 2 with an acetyl amine group (–NH–CO–CH3). Chitin is the main component of the exoskeleton, or outer covering of insects, crustaceans, and arachnids. It is also found in the cell walls of certain fungi and algae. After cellulose, chitin is the second most abundant biopolymer in nature. It is insoluble in water, organic solvents, weak acids and lyes.