CHEMISTRY GLOSSARY

structural formula    →   strukturna formula

Structural formula is a two dimensional representations of the arrangement of the atoms in molecules. Atoms are represented by their element symbols and covalent bonds are represented by lines. The symbol for carbon is often not drawn.

activated complex    →   aktivirani kompleks

Activated complex is an intermediate structure formed in the conversion of reactants to products. The activated complex is the structure at the maximum energy point along the reaction path; the activation energy is the difference between the energies of the activated complex and the reactants.

agarose    →   agaroza

Agarose is a polysaccharide obtained from agar that is used for a variety of life science applications especially in gel electrophoresis. The structure of agarose consists of alternating (1→3)-linked β-D-galactopyranose and (1→4)-linked 3,6-anhydro-α-L-galactopyranose.

alanine    →   alanin

Alanine is hydrophobic amino acids with aliphatic side chain. It is the second simplest amino acid, but used the most in proteins. The nonpolar hydrophobic amino acids tend to cluster together within proteins, stabilizing protein structure by means of hydrophobic interactions. Alanine is a nonessential amino acid, meaning it can be manufactured by the human body, and does not need to be obtained directly through the diet.

• Abbreviations: Ala, A
• IUPAC name: 2-aminopropanoic acid
• Molecular formula: C₃H₇NO₂
• Molecular weight: 89.09 g/mol

alkenes    →   alkeni

Alkenes are acyclic branched or unbranched hydrocarbons having one or more double carbon-carbon bonds in their molecules. In the systematic chemical nomenclature, alkene names end in the suffix -ene. The general formula is C_nH_(2n+2)-2x were x is the number of double bonds. Alkenes that have only one double bond form a homologous series: ethene (ethylene), CH₂=CH₂, propene, CH₃CH₂=CH₂, etc. Alkenes typically undergo addition reactions to the double bond.

alkynes    →   alkini

Alkynes (acetylenes) are acyclic branched or unbranched hydrocarbons having one or more triple carbon-carbon bond. In the systematic chemical nomenclature alkyne names end in the suffix -yne. The general formula is C_nH_(2n+2)-4x were x is the number of triple bonds. Alkynes that have only one triple bond form a homologous series: ethyne (acetylene), CH≡CH, propyne, CH₃CH≡CH, etc. Like alkenes, alkynes undergo addition reaction.

allomerism    →   alomerija

Allomerism is the appearance of substances with different chemical composition but the same crystalline form.

anion exchange    →   anionski izmjenjivač

An anionic resin has negative ions built into its structure and therefore exchanges positive ions. In an anion exchange, the side groups are ionised basic groups, such as (-NH₂, -NRH, -NR₂, -NR₃⁺) to which anions OH^- are attached. The exchange reaction is one in which different anions in the solution displace the OH^- from the solid.

cation exchange    →   kationski izmjenjivač

Cation exchange is a cationic resin has positive ions built into its structure and therefore exchanges negative ions. In the cation exchange, the side groups are ionised acidic groups, such as (-SO₃H, -COOH, -OH) to which cations H⁺ are attached. The exchange reaction is one in which different cations in the solution displace the H⁺ from the solid.

allotropy    →   alotropija

Allotropy (Gr. allos, other, and tropos, manner) is the phenomenon of an element existing in two or more physical forms in the same physical state. The difference between the forms involves either crystaline structure (white, red and black phosphorus), the number of atoms in the molecule of a gas (diatomic oxygen and triatomic ozone), or the molecular structure of a liquid (liquid helium an helium II).

In some cases, the allotropes are stable over a temperature range, with a definite transition point at which one changes into the other. For instance, tin has two allotropes: white (metallic) tin stable above 13.2 °C and grey (nonmetallic) tin stable below 13.2 °C. This form allotropy is called enantiotropy. Form of allotropy, in which there is no transition temperature at which the two are in equilibrium, is called monotropy.

Allotropy does not apply to the substance existing in different physical states as, for example, when ice melts and changes from solid ice to liquid water.

Allotropy is generally restricted to describing polymorphic behaviour in elements, while polymorphism may refer to any material having multiple crystal structures.