CHEMISTRY GLOSSARY

ionophore    →   ionofore

Ionophore is a relatively small hydrophobic molecule that facilitates the transport of ions across lipid membranes. Most ionophores are produced by microorganisms. There are two types of ionophores: channel formers, which combine to form a channel in the membrane through which ions can flow; and mobile ion carriers, which transport ions across a membrane by forming a complex with the ion.

micelle    →   micele

Micelle is an electrically charged colloidal particle, usually organic in nature, composed of aggregates of large molecules, e.g., in soaps and surfactants. For aqueous solutions, the hydrophilic end of the molecule is on the surface of the micelle, while the hydrophobic end (often a hydrocarbon chain) points toward the centre.

ideal solution    →   idealna otopina

Ideal solution is a solution in which solvent-solvent and solvent-solute interactions are identical, so that properties such as volume and enthalpy are exactly additive. Ideal solutions follow Raoult’s law, which states that the vapour pressure p_i of component i is p_i = x_i p_i^*, where x_i is the mole fraction of component i and p_i^* the vapour pressure of the pure substance i.

isoleucine    →   izoleucin

Isoleucine is hydrophobic amino acids with aliphatic side chain. It is one of the three amino acids having branched hydrocarbon side chains. The side chains of these amino acids are not reactive but, these residues are critically important for ligand binding to proteins, and play central roles in protein stability. Isoleucine is an essential amino acid, which means that humans cannot synthesize it, so it must be ingested.

• Abbreviations: Ile, I
• IUPAC name: 2-amino-3-methylpentanoic acid
• Molecular formula: C₆H₁₃NO₂
• Molecular weight: 131.12 g/mol

van der Waals’ force    →   van der Waalsova sila

Van derWaals’ force is the weak attractive force between two molecules which arises from electric dipole interactions. It can lead to the formation of stable but weakly bound dimer molecules or clusters. They are named after the Dutch physicist Johannes van der Waals (1837-1923).

nonpolar molecule    →   nepolarna molekula

Nonpolar molecule is a molecule which has no separation of charge, so no positive or negative poles are formed. For example, the Cl₂ molecule has no polar bonds (molecule with one type of atom), CH₄ is a non-polar molecule (due to its symmetry). Nonpolar molecules do not dissolve in water as they cannot form hydrogen bonds (thus are hydrophobic) but do dissolve in lipids or fats (lipophilic).

nuclear magnetic resonance    →   nuklearna magnetska rezonancija

Nuclear magnetic resonance (NMR) is a type of radio-frequency spectroscopy based on the magnetic field generated by the spinning of electrically charged atomic nuclei. This nuclear magnetic field is caused to interact with a very large (1 T - 5 T) magnetic field of the instrument magnet. NMR techniques have been applied to studies of electron densities and chemical bonding and have become a fundamental research tool for structure determinations in organic chemistry.

proline    →   prolin

Proline has an aliphatic side chain with a distinctive cyclic structure. It is unusual because it is conformationally restricted. The secondary amino (imino) group of proline residues is held in a rigid conformation that reduces the structural flexibility of polypeptide regions containing proline. It is not an essential amino acid, which means that the human body can synthesize it.

• Abbreviations: Pro, P
• IUPAC name: pyrrolidine-2-carboxylic acid
• Molecular formula: C₅H₉NO₂
• Molecular weight: 115.13 g/mol

tryptophan    →   triptofan

Tryptophan is hydrophobic amino acids with aromatic side chain. Tryptophan is large aromatic residue that is normally found buried in the interior of a protein and is important for protein stability. Tryptophan has the largest side chain and is the least common amino acid in proteins. It has spectral properties that make it the best inherent probe for following protein folding and conformational changes associated with biochemical processes. It is an essential amino acid, which means that humans cannot synthesize it, so it must be ingested.

• Abbreviations: Trp, W
• IUPAC name: 2-amino-3-(1H-indol-3-yl)propanoic acid
• Molecular formula: C₁₁H₁₂N₂O₂
• Molecular weight: 204.23 g/mol

tyrosine    →   tirozin

Tyrosine is hydrophobic amino acids with aromatic side chain. Tyrosine is large aromatic residue that is normally found buried in the interior of a protein and is important for protein stability. Tyrosine has special properties since its hydroxyl side chain may function as a powerful nucleophile in an enzyme active site (when ionized) and is a common site for phosphorylation in cell signaling cascades. Tyrosine absorbs ultraviolet radiation and contributes to the absorbance spectra of proteins. It is not essential (or semi-essential) to the human diet, since it is synthesized in the body from other metabolites.

• Abbreviations: Tyr, Y
• IUPAC name: 2-amino-3-(4-hydroxyphenyl)propanoic acid
• Molecular formula: C₉H₁₁NO₃
• Molecular weight: 181.19 g/mol