CHEMISTRY GLOSSARY

planary structure    →   planarna struktura molekule

Planary structure of molecule is a structure of molecule in which all atoms in the molecule lie in the same plane.

ringlike structure    →   prstenasta struktura

The ringlike structure is a structure by which the cycloalcanes and aromates are shown.

condensed structural formulas    →   kondenzirane strukturne formule

Condensed structural formulas are shortened and easier layout of structural formulas of organic compounds (butane, CH₃(CH₂)₂CH₃).

structural isomer    →   strukturni izomer

Structural isomers are compounds that have the same formula, but different constituents. Dimethyl ether (CH₃OCH₃) and ethanol (CH₃CH₂OH), for example, are constitutional isomers with general formula C₃H₆O.

structural formula    →   strukturna formula

Structural formula is a two dimensional representations of the arrangement of the atoms in molecules. Atoms are represented by their element symbols and covalent bonds are represented by lines. The symbol for carbon is often not drawn.

acetal    →   acetal

Acetals are organic compounds having the structure R₂C(OR’)₂ (R’ ≠ H). They are organic compounds formed by addition of alcohol molecules to aldehyde or ketone molecules. Originally, the term was confined to derivatives of aldehydes (one R = H), but it now applies equally to derivatives of ketones (neither R = H ). Mixed acetals have different R’ groups. The formation of acetals is reversible; acetals can be hydrolysed back to aldehydes (ketone) in acidic solutions.

Acetal, 1,1-diethoxyethane (CH₃CH(OC₂H₅)₂), is an organic compound, pleasant smelling, formed by addition of ethyl alcohol to ethanal (acetaldehyde). It is used as a solvent and in synthetic organic chemistry.

acid    →   kiselina

Acid is a type of compound that contains hydrogen and dissociates in water to produce positive hydrogen ions. The reaction for an acid HA is commonly written:

In fact, the hydrogen ion (the proton) is solvated, and the complete reaction is:

This definition of acids comes from the Arrhenius theory. Such acids tend to be corrosive substances with a sharp taste, which turn litmus red and produce colour changes with other indicators. They are referred to as protonic acids and are classified into strong acids, which are almost completely dissociated in water, (e.g. sulphuric acid and hydrochloric acid), and weak acids, which are only partially dissociated (e.g. acetic acid and hydrogen sulphide). The strength of an acid depends on the extent to which it dissociates, and is measured by its dissociation constant.

In the Lowry-Brønsted theory of acids and bases (1923), the definition was extended to one in which an acid is a proton donor (a Brønsted acid), and a base is a proton acceptor (a Brønsted base). An important feature of the Lowry-Brønsted concept is that when an acid gives up a proton, a conjugate base is formed that is capable of accepting a proton.

Similarly, every base produces its conjugate acid as a result of accepting a proton.

For example, acetate ion is the conjugate base of acetic acid, and ammonium ion is the conjugate acid of ammonia.

As the acid of a conjugate acid/base pair becomes weaker, its conjugate base becomes stronger and vice versa.

A further extension of the idea of acids and bases was made in the Lewis theory. In this, a G. N. Lewis acid is a compound or atom that can accept a pair of electrons and a Lewis base is one that can donate an electron pair. This definition encompasses "traditional" acid-base reactions, but it also includes reactions that do not involve ions, e.g.

in which NH₃ is the base (donor) and BCl₃ the acid (acceptor).

activated complex    →   aktivirani kompleks

Activated complex is an intermediate structure formed in the conversion of reactants to products. The activated complex is the structure at the maximum energy point along the reaction path; the activation energy is the difference between the energies of the activated complex and the reactants.

agarose    →   agaroza

Agarose is a polysaccharide obtained from agar that is used for a variety of life science applications especially in gel electrophoresis. The structure of agarose consists of alternating (1→3)-linked β-D-galactopyranose and (1→4)-linked 3,6-anhydro-α-L-galactopyranose.

alanine    →   alanin

Alanine is hydrophobic amino acids with aliphatic side chain. It is the second simplest amino acid, but used the most in proteins. The nonpolar hydrophobic amino acids tend to cluster together within proteins, stabilizing protein structure by means of hydrophobic interactions. Alanine is a nonessential amino acid, meaning it can be manufactured by the human body, and does not need to be obtained directly through the diet.

• Abbreviations: Ala, A
• IUPAC name: 2-aminopropanoic acid
• Molecular formula: C₃H₇NO₂
• Molecular weight: 89.09 g/mol